1 HAMP#1
168-239 aa · 72 aa · 14.7% of protein
Raw token
HAMP:168:0.0000000000243:239:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIZ56_RS08950
Histidine kinase, Classic
Agathobacter rectalis · GCF_020557395
ClassHKTypeClassicLength491 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020557395#LIZ56_RS08950Stable P2CS identifier used across views.
GenomeGCF_020557395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length491 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 491 aa (50.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa491 aa
Domain-by-domain annotation3 items
2 HisKA#2
264-331 aa · 68 aa · 13.8% of protein
Raw token
HisKA:264:0.0000000000000574:331:68:643 HATPase_c#3
376-485 aa · 110 aa · 22.4% of protein
Raw token
HATPase_c:376:8.14e-20:485:114:109- Raw architecture: HAMP:168:0.0000000000243:239:72:69#HisKA:264:0.0000000000000574:331:68:64#HATPase_c:376:8.14e-20:485:114:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020557395::NZ_JAJCJK010000012.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span18903-21103Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIZ56_08920RefSeq proteinWP_055223506.1
Context group ID
GCF_020557395::NZ_JAJCJK010000012.1::G00008Context members
LIZ56_RS08945LIZ56_RS08950
Partner locus tags
LIZ56_RS08945LIZ56_RS08950
Partner old locus tags
LIZ56_08915LIZ56_08920
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055223506.1Primary protein accession used for annex mappings.
UniProt accessionA0A173U163Primary UniProt accession resolved in the annex database.
UniProt IDA0A173U163_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 2Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIZ56_RS08950Primary locus identifier stored in the genes table.
Old locus tagLIZ56_08920Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCJK010000012.1Sequence record reported by the local genomic context database.
Genomic interval19 628-21 103 nt1 476 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span18 903-21 103 ntGCF_020557395::NZ_JAJCJK010000012.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020557395::NZ_JAJCJK010000012.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCJK010000012.1All displayed genes belong to this local TCS context.
Neighborhood span18 903-21 103 nt2 201 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 903 nt21 103 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIZ56_RS08945GCF_020557395#LIZ56_RS08945
RROmpR
18 903-19 583 nt · Forward (+)
LIZ56_RS08950GCF_020557395#LIZ56_RS08950
HKClassicCurrent focus
19 628-21 103 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404855#AQ987_RS04385Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1527726
Simplified PFAM architecture for HKOC_1527726
PFAM domain coverage: 231 / 491 aa (47.0%)
1 aa491 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[186-239] | HisKA[264-331] | HATPase_c[377-485]
- Domain count: 3
- Matched identifier: HKOC_1527726
- Positioned domains: HAMP 186-239 ; HisKA 264-331 ; HATPase_c 377-485
Cluster members and taxonomy
Representative gene: GCF_001404855#AQ987_RS04385
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_020557395
AssemblyASM2055739v1 · Contighaploid
Genome composition3 324 734 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 90 · HK 36 · RR 51CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key