1 HisKA#1
198-263 aa · 66 aa · 15.6% of protein
Raw token
HisKA:198:0.00000000000365:263:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIZ56_RS05665
Histidine kinase, Classic
Agathobacter rectalis · GCF_020557395
ClassHKTypeClassicLength424 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020557395#LIZ56_RS05665Stable P2CS identifier used across views.
GenomeGCF_020557395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length424 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 424 aa (40.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa424 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
318-422 aa · 105 aa · 24.8% of protein
Raw token
HATPase_c:318:2.46e-16:422:106:109- Raw architecture: HisKA:198:0.00000000000365:263:66:64#HATPase_c:318:2.46e-16:422:106:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020557395::NZ_JAJCJK010000006.1::G00048
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span76599-78583Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIZ56_05660RefSeq proteinWP_306780709.1
Context group ID
GCF_020557395::NZ_JAJCJK010000006.1::G00048Context members
LIZ56_RS05660LIZ56_RS05665
Partner locus tags
LIZ56_RS05660LIZ56_RS05665
Partner old locus tags
LIZ56_05655LIZ56_05660
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_306780709.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4U810Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4U810_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIZ56_RS05665Primary locus identifier stored in the genes table.
Old locus tagLIZ56_05660Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCJK010000006.1Sequence record reported by the local genomic context database.
Genomic interval77 309-78 583 nt1 275 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span76 599-78 583 ntGCF_020557395::NZ_JAJCJK010000006.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020557395::NZ_JAJCJK010000006.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCJK010000006.1All displayed genes belong to this local TCS context.
Neighborhood span76 599-78 583 nt1 985 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
76 599 nt78 583 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIZ56_RS05660GCF_020557395#LIZ56_RS05660
RROmpR
76 599-77 270 nt · Forward (+)
LIZ56_RS05665GCF_020557395#LIZ56_RS05665
HKClassicCurrent focus
77 309-78 583 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020557395#LIZ56_RS05665The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2229165
Simplified PFAM architecture for HKOC_2229165
PFAM domain coverage: 170 / 424 aa (40.1%)
1 aa424 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[199-263] | HATPase_c[318-422]
- Domain count: 2
- Matched identifier: HKOC_2229165
- Positioned domains: HisKA 199-263 ; HATPase_c 318-422
Cluster members and taxonomy
Representative gene: GCF_020557395#LIZ56_RS05665
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_020557395
AssemblyASM2055739v1 · Contighaploid
Genome composition3 324 734 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 90 · HK 36 · RR 51CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key