1 HisKA#1
194-255 aa · 62 aa · 15.6% of protein
Raw token
HisKA:194:0.00000000000166:255:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIZ56_RS05135
Histidine kinase, Classic
Agathobacter rectalis · GCF_020557395
ClassHKTypeClassicLength398 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020557395#LIZ56_RS05135Stable P2CS identifier used across views.
GenomeGCF_020557395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length398 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage149 / 398 aa (37.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa398 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
311-397 aa · 87 aa · 21.9% of protein
Raw token
HATPase_c:311:0.000019:397:106:109- Raw architecture: HisKA:194:0.00000000000166:255:62:64#HATPase_c:311:0.000019:397:106:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020557395::NZ_JAJCJK010000005.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span140657-142538Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIZ56_05140RefSeq proteinWP_306771482.1
Context group ID
GCF_020557395::NZ_JAJCJK010000005.1::G00042Context members
LIZ56_RS05135LIZ56_RS05140
Partner locus tags
LIZ56_RS05135LIZ56_RS05140
Partner old locus tags
LIZ56_05140LIZ56_05145
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_306771482.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4UFT7Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4UFT7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIZ56_RS05135Primary locus identifier stored in the genes table.
Old locus tagLIZ56_05140Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCJK010000005.1Sequence record reported by the local genomic context database.
Genomic interval140 657-141 853 nt1 197 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span140 657-142 538 ntGCF_020557395::NZ_JAJCJK010000005.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020557395::NZ_JAJCJK010000005.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCJK010000005.1All displayed genes belong to this local TCS context.
Neighborhood span140 657-142 538 nt1 882 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
140 657 nt142 538 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIZ56_RS05135GCF_020557395#LIZ56_RS05135
HKClassicCurrent focus
140 657-141 853 nt · Reverse (-)
LIZ56_RS05140GCF_020557395#LIZ56_RS05140
RROmpR
141 843-142 538 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015560015#RCO57_RS07235Use this link to inspect the representative gene detail.
PFAM architectureHisKA1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2463553
Simplified PFAM architecture for HKOC_2463553
PFAM domain coverage: 62 / 398 aa (15.6%)
1 aa398 aa
HisKA
- Simplified architecture: HisKA
- Raw architecture: HisKA[195-256]
- Domain count: 1
- Matched identifier: HKOC_2463553
- Positioned domains: HisKA 195-256
Cluster members and taxonomy
Representative gene: GCF_015560015#RCO57_RS07235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_020557395
AssemblyASM2055739v1 · Contighaploid
Genome composition3 324 734 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 90 · HK 36 · RR 51CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key