1 Response_reg#1
4-120 aa · 117 aa · 45.9% of protein
Raw token
Response_reg:4:3.35e-20:120:119:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIZ56_RS03575
Response regulator LytTR family
Agathobacter rectalis · GCF_020557395
ClassRRTypeLytTRLength255 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020557395#LIZ56_RS03575Stable P2CS identifier used across views.
GenomeGCF_020557395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length255 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage205 / 255 aa (80.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa255 aa
Domain-by-domain annotation2 items
2 LytTR#2
149-236 aa · 88 aa · 34.5% of protein
Raw token
LytTR:149:1.26e-16:236:93:98- Raw architecture: Response_reg:4:3.35e-20:120:119:111#LytTR:149:1.26e-16:236:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020557395::NZ_JAJCJK010000004.1::G00032
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span22788-23555Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIZ56_03580RefSeq proteinWP_015568549.1
Context group ID
GCF_020557395::NZ_JAJCJK010000004.1::G00032Context members
LIZ56_RS03575
Partner locus tags
LIZ56_RS03575
Partner old locus tags
LIZ56_03580
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015568549.1Primary protein accession used for annex mappings.
UniProt accessionA0A173TL63Primary UniProt accession resolved in the annex database.
UniProt IDA0A173TL63_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIZ56_RS03575Primary locus identifier stored in the genes table.
Old locus tagLIZ56_03580Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCJK010000004.1Sequence record reported by the local genomic context database.
Genomic interval22 788-23 555 nt768 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span22 788-23 555 ntGCF_020557395::NZ_JAJCJK010000004.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020557395::NZ_JAJCJK010000004.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCJK010000004.1All displayed genes belong to this local TCS context.
Neighborhood span22 788-23 555 nt768 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 788 nt23 555 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIZ56_RS03575GCF_020557395#LIZ56_RS03575
RRLytTRCurrent focus
22 788-23 555 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209955#ERE_RS06220Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0680148
Simplified PFAM architecture for RROC_0680148
PFAM domain coverage: 204 / 255 aa (80.0%)
1 aa255 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-119] | LytTR[149-236]
- Domain count: 2
- Matched identifier: RROC_0680148
- Positioned domains: Response_reg 4-119 ; Response_reg 4-119 ; LytTR 149-236 ; LytTR 149-236
Cluster members and taxonomy
Representative gene: GCF_000209955#ERE_RS06220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_020557395
AssemblyASM2055739v1 · Contighaploid
Genome composition3 324 734 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 90 · HK 36 · RR 51CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key