1 HisKA#1
123-189 aa · 67 aa · 19.5% of protein
Raw token
HisKA:123:0.000000212:189:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIZ56_RS03500
Histidine kinase, Classic
Agathobacter rectalis · GCF_020557395
ClassHKTypeClassicLength343 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020557395#LIZ56_RS03500Stable P2CS identifier used across views.
GenomeGCF_020557395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length343 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 343 aa (49.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa343 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
241-343 aa · 103 aa · 30.0% of protein
Raw token
HATPase_c:241:3.95e-26:343:103:109- Raw architecture: HisKA:123:0.000000212:189:67:64#HATPase_c:241:3.95e-26:343:103:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020557395::NZ_JAJCJK010000004.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span10592-12309Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIZ56_03505RefSeq proteinWP_006859034.1
Context group ID
GCF_020557395::NZ_JAJCJK010000004.1::G00031Context members
LIZ56_RS03500LIZ56_RS03505
Partner locus tags
LIZ56_RS03500LIZ56_RS03505
Partner old locus tags
LIZ56_03505LIZ56_03510
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006859034.1Primary protein accession used for annex mappings.
UniProt accessionG2T5F7Primary UniProt accession resolved in the annex database.
UniProt IDG2T5F7_ROSHADisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIZ56_RS03500Primary locus identifier stored in the genes table.
Old locus tagLIZ56_03505Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCJK010000004.1Sequence record reported by the local genomic context database.
Genomic interval10 592-11 623 nt1 032 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span10 592-12 309 ntGCF_020557395::NZ_JAJCJK010000004.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020557395::NZ_JAJCJK010000004.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCJK010000004.1All displayed genes belong to this local TCS context.
Neighborhood span10 592-12 309 nt1 718 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 592 nt12 309 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIZ56_RS03500GCF_020557395#LIZ56_RS03500
HKClassicCurrent focus
10 592-11 623 nt · Reverse (-)
LIZ56_RS03505GCF_020557395#LIZ56_RS03505
RROmpR
11 620-12 309 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156535#ROSINTL182_RS17575Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2827784
Simplified PFAM architecture for HKOC_2827784
PFAM domain coverage: 173 / 343 aa (50.4%)
1 aa343 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[125-189] | HATPase_c[235-342]
- Domain count: 2
- Matched identifier: HKOC_2827784
- Positioned domains: HisKA 125-189 ; HATPase_c 235-342
Cluster members and taxonomy
Representative gene: GCF_000156535#ROSINTL182_RS17575
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_020557395
AssemblyASM2055739v1 · Contighaploid
Genome composition3 324 734 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 90 · HK 36 · RR 51CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key