1 HisKA#1
342-408 aa · 67 aa · 12.1% of protein
Raw token
HisKA:342:1.38e-16:408:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP95_RS07730
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_020537905
ClassHKTypeClassicLength554 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020537905#LIP95_RS07730Stable P2CS identifier used across views.
GenomeGCF_020537905Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length554 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage161 / 554 aa (29.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa554 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
457-550 aa · 94 aa · 17.0% of protein
Raw token
HATPase_c:457:5.6e-20:550:95:109- Raw architecture: HisKA:342:1.38e-16:408:67:64#HATPase_c:457:5.6e-20:550:95:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020537905::NZ_JAJBNJ010000008.1::G00066
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span119593-121787Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP95_07725RefSeq proteinWP_118700479.1
Context group ID
GCF_020537905::NZ_JAJBNJ010000008.1::G00066Context members
LIP95_RS07725LIP95_RS07730
Partner locus tags
LIP95_RS07725LIP95_RS07730
Partner old locus tags
LIP95_07720LIP95_07725
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118700479.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP95_RS07730Primary locus identifier stored in the genes table.
Old locus tagLIP95_07725Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBNJ010000008.1Sequence record reported by the local genomic context database.
Genomic interval120 123-121 787 nt1 665 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span119 593-121 787 ntGCF_020537905::NZ_JAJBNJ010000008.1::G00066
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537905::NZ_JAJBNJ010000008.1::G00066Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBNJ010000008.1All displayed genes belong to this local TCS context.
Neighborhood span119 593-121 787 nt2 195 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
119 593 nt121 787 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP95_RS07725GCF_020537905#LIP95_RS07725
RRCheY
119 593-120 009 nt · Reverse (-)
LIP95_RS07730GCF_020537905#LIP95_RS07730
HKClassicCurrent focus
120 123-121 787 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003481455#DXB71_RS13325Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1281357
Simplified PFAM architecture for HKOC_1281357
PFAM domain coverage: 161 / 554 aa (29.1%)
1 aa554 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[342-408] | HATPase_c[458-551]
- Domain count: 2
- Matched identifier: HKOC_1281357
- Positioned domains: HisKA 342-408 ; HATPase_c 458-551
Cluster members and taxonomy
Representative gene: GCF_003481455#DXB71_RS13325
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020537905
AssemblyASM2053790v1 · Contighaploid
Genome composition3 643 235 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 106 · HK 52 · RR 50CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key