1 Response_reg#1
4-91 aa · 88 aa · 37.0% of protein
Raw token
Response_reg:4:0.00000000346:91:88:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP95_RS06250
Response regulator LytTR family
Fusicatenibacter saccharivorans · GCF_020537905
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020537905#LIP95_RS06250Stable P2CS identifier used across views.
GenomeGCF_020537905Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 238 aa (76.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
140-233 aa · 94 aa · 39.5% of protein
Raw token
LytTR:140:8.41e-21:233:99:98- Raw architecture: Response_reg:4:0.00000000346:91:88:111#LytTR:140:8.41e-21:233:99:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020537905::NZ_JAJBNJ010000006.1::G00055
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span45300-46016Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP95_06245RefSeq proteinWP_118660557.1
Context group ID
GCF_020537905::NZ_JAJBNJ010000006.1::G00055Context members
LIP95_RS06250
Partner locus tags
LIP95_RS06250
Partner old locus tags
LIP95_06245
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118660557.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP95_RS06250Primary locus identifier stored in the genes table.
Old locus tagLIP95_06245Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBNJ010000006.1Sequence record reported by the local genomic context database.
Genomic interval45 300-46 016 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span45 300-46 016 ntGCF_020537905::NZ_JAJBNJ010000006.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537905::NZ_JAJBNJ010000006.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBNJ010000006.1All displayed genes belong to this local TCS context.
Neighborhood span45 300-46 016 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
45 300 nt46 016 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIP95_RS06250GCF_020537905#LIP95_RS06250
RRLytTRCurrent focus
45 300-46 016 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003479105#DWX32_RS15970Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0940470
Simplified PFAM architecture for RROC_0940470
PFAM domain coverage: 199 / 238 aa (83.6%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-108] | LytTR[139-232]
- Domain count: 2
- Matched identifier: RROC_0940470
- Positioned domains: Response_reg 4-108 ; Response_reg 4-108 ; LytTR 139-232 ; LytTR 139-232
Cluster members and taxonomy
Representative gene: GCF_003479105#DWX32_RS15970
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020537905
AssemblyASM2053790v1 · Contighaploid
Genome composition3 643 235 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 106 · HK 52 · RR 50CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key