1 PilJ#1
38-124 aa · 87 aa · 8.2% of protein
Raw token
PilJ:38:0.0000518:124:100:112P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP95_RS06075
Histidine kinase, Hybrid
Fusicatenibacter saccharivorans · GCF_020537905
ClassHKTypeHybridLength1058 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020537905#LIP95_RS06075Stable P2CS identifier used across views.
GenomeGCF_020537905Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
PilJGGDEFHisKAHATPase_cResponse_reg
Protein length1058 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage541 / 1058 aa (51.1%)Merged over positioned domains only.
Domain description1 PilJ,1 GGDEF,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1058 aa
Domain-by-domain annotation5 items
2 GGDEF#2
199-350 aa · 152 aa · 14.4% of protein
Raw token
GGDEF:199:1.74e-21:350:157:1603 HisKA#3
678-744 aa · 67 aa · 6.3% of protein
Raw token
HisKA:678:0.0000000000000493:744:67:644 HATPase_c#4
791-909 aa · 119 aa · 11.2% of protein
Raw token
HATPase_c:791:1.93e-28:909:119:1095 Response_reg#5
933-1048 aa · 116 aa · 11.0% of protein
Raw token
Response_reg:933:1.71e-27:1048:116:111- Raw architecture: PilJ:38:0.0000518:124:100:112#GGDEF:199:1.74e-21:350:157:160#HisKA:678:0.0000000000000493:744:67:64#HATPase_c:791:1.93e-28:909:119:109#Response_reg:933:1.71e-27:1048:116:111
- Domain description: 1 PilJ,1 GGDEF,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020537905::NZ_JAJBNJ010000006.1::G00052
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span237-3413Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP95_06070RefSeq proteinWP_118719908.1
Context group ID
GCF_020537905::NZ_JAJBNJ010000006.1::G00052Context members
LIP95_RS06075
Partner locus tags
LIP95_RS06075
Partner old locus tags
LIP95_06070
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118719908.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP95_RS06075Primary locus identifier stored in the genes table.
Old locus tagLIP95_06070Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBNJ010000006.1Sequence record reported by the local genomic context database.
Genomic interval237-3 413 nt3 177 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span237-3 413 ntGCF_020537905::NZ_JAJBNJ010000006.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537905::NZ_JAJBNJ010000006.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBNJ010000006.1All displayed genes belong to this local TCS context.
Neighborhood span237-3 413 nt3 177 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
237 nt3 413 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIP95_RS06075GCF_020537905#LIP95_RS06075
HKHybridCurrent focus
237-3 413 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003479665#DWW13_RS09025Use this link to inspect the representative gene detail.
PFAM architectureGGDEF + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0253748
Simplified PFAM architecture for HKOC_0253748
PFAM domain coverage: 452 / 1058 aa (42.7%)
1 aa1058 aa
GGDEFHisKAHATPase_cResponse_reg
- Simplified architecture: GGDEF + HisKA + HATPase_c + Response_reg
- Raw architecture: GGDEF[200-352] | HisKA[678-744] | HATPase_c[792-907] | Response_reg[933-1048]
- Domain count: 4
- Matched identifier: HKOC_0253748
- Positioned domains: GGDEF 200-352 ; HisKA 678-744 ; HATPase_c 792-907 ; Response_reg 933-1048
Cluster members and taxonomy
Representative gene: GCF_003479665#DWW13_RS09025
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020537905
AssemblyASM2053790v1 · Contighaploid
Genome composition3 643 235 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 106 · HK 52 · RR 50CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key