1 HAMP#1
272-346 aa · 75 aa · 13.1% of protein
Raw token
HAMP:272:0.0000000000061:346:75:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP95_RS05310
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_020537905
ClassHKTypeClassicLength571 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020537905#LIP95_RS05310Stable P2CS identifier used across views.
GenomeGCF_020537905Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length571 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage259 / 571 aa (45.4%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa571 aa
Domain-by-domain annotation3 items
2 His_kinase#2
361-439 aa · 79 aa · 13.8% of protein
Raw token
His_kinase:361:2.23e-23:439:80:803 HATPase_c#3
458-562 aa · 105 aa · 18.4% of protein
Raw token
HATPase_c:458:0.000000992:562:107:109- Raw architecture: HAMP:272:0.0000000000061:346:75:69#His_kinase:361:2.23e-23:439:80:80#HATPase_c:458:0.000000992:562:107:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020537905::NZ_JAJBNJ010000005.1::G00047
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17837-21169Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP95_05305RefSeq proteinWP_158579757.1
Context group ID
GCF_020537905::NZ_JAJBNJ010000005.1::G00047Context members
LIP95_RS05305LIP95_RS05310
Partner locus tags
LIP95_RS05305LIP95_RS05310
Partner old locus tags
LIP95_05300LIP95_05305
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_158579757.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP95_RS05310Primary locus identifier stored in the genes table.
Old locus tagLIP95_05305Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBNJ010000005.1Sequence record reported by the local genomic context database.
Genomic interval19 454-21 169 nt1 716 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span17 837-21 169 ntGCF_020537905::NZ_JAJBNJ010000005.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537905::NZ_JAJBNJ010000005.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBNJ010000005.1All displayed genes belong to this local TCS context.
Neighborhood span17 837-21 169 nt3 333 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 837 nt21 169 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP95_RS05305GCF_020537905#LIP95_RS05305
RRunclassified
17 837-19 417 nt · Reverse (-)
LIP95_RS05310GCF_020537905#LIP95_RS05310
HKClassicCurrent focus
19 454-21 169 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003479665#DWW13_RS06970Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1208425
Simplified PFAM architecture for HKOC_1208425
PFAM domain coverage: 125 / 571 aa (21.9%)
1 aa571 aa
HAMPHis_kinase
- Simplified architecture: HAMP + His_kinase
- Raw architecture: HAMP[294-344] | His_kinase[364-437]
- Domain count: 2
- Matched identifier: HKOC_1208425
- Positioned domains: HAMP 294-344 ; His_kinase 364-437
Cluster members and taxonomy
Representative gene: GCF_003479665#DWW13_RS06970
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020537905
AssemblyASM2053790v1 · Contighaploid
Genome composition3 643 235 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 106 · HK 52 · RR 50CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key