1 Response_reg#1
4-116 aa · 113 aa · 21.5% of protein
Raw token
Response_reg:4:1.25e-26:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP95_RS05305
Response regulator, unclassified
Fusicatenibacter saccharivorans · GCF_020537905
ClassRRTypeunclassifiedLength526 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020537905#LIP95_RS05305Stable P2CS identifier used across views.
GenomeGCF_020537905Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length526 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage152 / 526 aa (28.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa526 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
488-526 aa · 39 aa · 7.4% of protein
Raw token
HTH_AraC:488:0.00000000032:526:39:42- Raw architecture: Response_reg:4:1.25e-26:116:113:111#HTH_AraC:488:0.00000000032:526:39:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020537905::NZ_JAJBNJ010000005.1::G00047
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17837-21169Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP95_05300RefSeq proteinWP_118719670.1
Context group ID
GCF_020537905::NZ_JAJBNJ010000005.1::G00047Context members
LIP95_RS05305LIP95_RS05310
Partner locus tags
LIP95_RS05305LIP95_RS05310
Partner old locus tags
LIP95_05300LIP95_05305
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118719670.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP95_RS05305Primary locus identifier stored in the genes table.
Old locus tagLIP95_05300Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBNJ010000005.1Sequence record reported by the local genomic context database.
Genomic interval17 837-19 417 nt1 581 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span17 837-21 169 ntGCF_020537905::NZ_JAJBNJ010000005.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537905::NZ_JAJBNJ010000005.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBNJ010000005.1All displayed genes belong to this local TCS context.
Neighborhood span17 837-21 169 nt3 333 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 837 nt21 169 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP95_RS05305GCF_020537905#LIP95_RS05305
RRunclassifiedCurrent focus
17 837-19 417 nt · Reverse (-)
LIP95_RS05310GCF_020537905#LIP95_RS05310
HKClassic
19 454-21 169 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003479665#DWW13_RS06975Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0117855
Simplified PFAM architecture for RROC_0117855
PFAM domain coverage: 191 / 526 aa (36.3%)
1 aa526 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[448-526]
- Domain count: 2
- Matched identifier: RROC_0117855
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_18 448-526 ; HTH_18 448-526
Cluster members and taxonomy
Representative gene: GCF_003479665#DWW13_RS06975
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020537905
AssemblyASM2053790v1 · Contighaploid
Genome composition3 643 235 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 106 · HK 52 · RR 50CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key