1 dCache_1#1
43-267 aa · 225 aa · 38.1% of protein
Raw token
dCache_1:43:0.0000233:267:225:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LC508_RS11435
Histidine kinase, Classic
Blautia parvula · GCF_020215665
ClassHKTypeClassicLength591 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020215665#LC508_RS11435Stable P2CS identifier used across views.
GenomeGCF_020215665Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length591 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage481 / 591 aa (81.4%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa591 aa
Domain-by-domain annotation4 items
2 HAMP#2
298-366 aa · 69 aa · 11.7% of protein
Raw token
HAMP:298:0.00000209:366:69:693 His_kinase#3
382-461 aa · 80 aa · 13.5% of protein
Raw token
His_kinase:382:1.73e-34:461:80:804 HATPase_c#4
480-586 aa · 107 aa · 18.1% of protein
Raw token
HATPase_c:480:0.000000000000187:586:109:109- Raw architecture: dCache_1:43:0.0000233:267:225:195#HAMP:298:0.00000209:366:69:69#His_kinase:382:1.73e-34:461:80:80#HATPase_c:480:0.000000000000187:586:109:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020215665::NZ_CP084061.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2439257-2442644Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLC508_11435RefSeq proteinWP_033141266.1
Context group ID
GCF_020215665::NZ_CP084061.1::G00045Context members
LC508_RS11430LC508_RS11435
Partner locus tags
LC508_RS11430LC508_RS11435
Partner old locus tags
LC508_11430LC508_11435
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_033141266.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLC508_RS11435Primary locus identifier stored in the genes table.
Old locus tagLC508_11435Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP084061.1Sequence record reported by the local genomic context database.
Genomic interval2 440 869-2 442 644 nt1 776 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 439 257-2 442 644 ntGCF_020215665::NZ_CP084061.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020215665::NZ_CP084061.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP084061.1All displayed genes belong to this local TCS context.
Neighborhood span2 439 257-2 442 644 nt3 388 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 439 257 nt2 442 644 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LC508_RS11430GCF_020215665#LC508_RS11430
RRunclassified
2 439 257-2 440 849 nt · Reverse (-)
LC508_RS11435GCF_020215665#LC508_RS11435
HKClassicCurrent focus
2 440 869-2 442 644 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020215665#LC508_RS11435The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1107693
Simplified PFAM architecture for HKOC_1107693
PFAM domain coverage: 185 / 591 aa (31.3%)
1 aa591 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[382-461] | HATPase_c[481-585]
- Domain count: 2
- Matched identifier: HKOC_1107693
- Positioned domains: His_kinase 382-461 ; HATPase_c 481-585
Cluster members and taxonomy
Representative gene: GCF_020215665#LC508_RS11435
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 877 527 · GCF_020215665
AssemblyASM2021566v1 · Complete Genomereference genome · haploid
Genome composition6 247 046 bp · 46,5% GCBlautia parvula
Signal transduction countsGenes 262 · HK 135 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key