1 Response_reg#1
3-107 aa · 105 aa · 44.9% of protein
Raw token
Response_reg:3:1.11e-24:107:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LC508_RS01405
Response regulator LytTR family
Blautia parvula · GCF_020215665
ClassRRTypeLytTRLength234 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020215665#LC508_RS01405Stable P2CS identifier used across views.
GenomeGCF_020215665Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage198 / 234 aa (84.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 LytTR#2
134-226 aa · 93 aa · 39.7% of protein
Raw token
LytTR:134:2.51e-16:226:98:98- Raw architecture: Response_reg:3:1.11e-24:107:109:111#LytTR:134:2.51e-16:226:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020215665::NZ_CP084061.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span274331-275035Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLC508_01405RefSeq proteinWP_033143471.1
Context group ID
GCF_020215665::NZ_CP084061.1::G00006Context members
LC508_RS01405
Partner locus tags
LC508_RS01405
Partner old locus tags
LC508_01405
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033143471.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1DKG8Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1DKG8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLC508_RS01405Primary locus identifier stored in the genes table.
Old locus tagLC508_01405Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP084061.1Sequence record reported by the local genomic context database.
Genomic interval274 331-275 035 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span274 331-275 035 ntGCF_020215665::NZ_CP084061.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020215665::NZ_CP084061.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP084061.1All displayed genes belong to this local TCS context.
Neighborhood span274 331-275 035 nt705 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
274 331 nt275 035 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LC508_RS01405GCF_020215665#LC508_RS01405
RRLytTRCurrent focus
274 331-275 035 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS16485Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1055604
Simplified PFAM architecture for RROC_1055604
PFAM domain coverage: 199 / 234 aa (85.0%)
1 aa234 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-111] | LytTR[136-225]
- Domain count: 2
- Matched identifier: RROC_1055604
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; LytTR 136-225 ; LytTR 136-225
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS16485
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 877 527 · GCF_020215665
AssemblyASM2021566v1 · Complete Genomereference genome · haploid
Genome composition6 247 046 bp · 46,5% GCBlautia parvula
Signal transduction countsGenes 262 · HK 135 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key