1 HAMP#1
174-242 aa · 69 aa · 14.1% of protein
Raw token
HAMP:174:2.29e-16:242:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LC508_RS01170
Histidine kinase, Classic
Blautia parvula · GCF_020215665
ClassHKTypeClassicLength489 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020215665#LC508_RS01170Stable P2CS identifier used across views.
GenomeGCF_020215665Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length489 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 489 aa (50.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa489 aa
Domain-by-domain annotation3 items
2 HisKA#2
267-334 aa · 68 aa · 13.9% of protein
Raw token
HisKA:267:0.000000000000251:334:68:643 HATPase_c#3
379-486 aa · 108 aa · 22.1% of protein
Raw token
HATPase_c:379:5.48e-22:486:109:109- Raw architecture: HAMP:174:2.29e-16:242:69:69#HisKA:267:0.000000000000251:334:68:64#HATPase_c:379:5.48e-22:486:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020215665::NZ_CP084061.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span217817-219964Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLC508_01170RefSeq proteinWP_033141131.1
Context group ID
GCF_020215665::NZ_CP084061.1::G00005Context members
LC508_RS01165LC508_RS01170
Partner locus tags
LC508_RS01165LC508_RS01170
Partner old locus tags
LC508_01165LC508_01170
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033141131.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1DKC1Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1DKC1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLC508_RS01170Primary locus identifier stored in the genes table.
Old locus tagLC508_01170Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP084061.1Sequence record reported by the local genomic context database.
Genomic interval218 495-219 964 nt1 470 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span217 817-219 964 ntGCF_020215665::NZ_CP084061.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020215665::NZ_CP084061.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP084061.1All displayed genes belong to this local TCS context.
Neighborhood span217 817-219 964 nt2 148 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
217 817 nt219 964 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LC508_RS01165GCF_020215665#LC508_RS01165
RROmpR
217 817-218 491 nt · Forward (+)
LC508_RS01170GCF_020215665#LC508_RS01170
HKClassicCurrent focus
218 495-219 964 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS16710Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1543172
Simplified PFAM architecture for HKOC_1543172
PFAM domain coverage: 227 / 489 aa (46.4%)
1 aa489 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[190-241] | HisKA[267-332] | HATPase_c[379-487]
- Domain count: 3
- Matched identifier: HKOC_1543172
- Positioned domains: HAMP 190-241 ; HisKA 267-332 ; HATPase_c 379-487
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS16710
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 877 527 · GCF_020215665
AssemblyASM2021566v1 · Complete Genomereference genome · haploid
Genome composition6 247 046 bp · 46,5% GCBlautia parvula
Signal transduction countsGenes 262 · HK 135 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key