1 Response_reg#1
9-119 aa · 111 aa · 35.5% of protein
Raw token
Response_reg:9:1.28e-24:119:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LC508_RS05650
Response regulator, PleD family
Blautia parvula · GCF_020215665
ClassRRTypePleDLength313 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020215665#LC508_RS05650Stable P2CS identifier used across views.
GenomeGCF_020215665Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regGGDEF
Protein length313 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage267 / 313 aa (85.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa313 aa
Domain-by-domain annotation2 items
2 GGDEF#2
150-305 aa · 156 aa · 49.8% of protein
Raw token
GGDEF:150:7.63e-42:305:160:160- Raw architecture: Response_reg:9:1.28e-24:119:111:111#GGDEF:150:7.63e-42:305:160:160
- Domain description: 1 Response_reg,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020215665::NZ_CP084061.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1177871-1180877Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLC508_05650RefSeq proteinWP_103730953.1
Context group ID
GCF_020215665::NZ_CP084061.1::G00022Context members
LC508_RS05645LC508_RS05650
Partner locus tags
LC508_RS05645LC508_RS05650
Partner old locus tags
LC508_05645LC508_05650
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_103730953.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1DJ63Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1DJ63_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLC508_RS05650Primary locus identifier stored in the genes table.
Old locus tagLC508_05650Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP084061.1Sequence record reported by the local genomic context database.
Genomic interval1 179 936-1 180 877 nt942 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 177 871-1 180 877 ntGCF_020215665::NZ_CP084061.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020215665::NZ_CP084061.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP084061.1All displayed genes belong to this local TCS context.
Neighborhood span1 177 871-1 180 877 nt3 007 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 177 871 nt1 180 877 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LC508_RS05645GCF_020215665#LC508_RS05645
HKCheA
1 177 871-1 179 922 nt · Reverse (-)
LC508_RS05650GCF_020215665#LC508_RS05650
RRPleDCurrent focus
1 179 936-1 180 877 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS20655Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0544688
Simplified PFAM architecture for RROC_0544688
PFAM domain coverage: 267 / 313 aa (85.3%)
1 aa313 aa
Response_regGGDEF
- Simplified architecture: Response_reg + GGDEF
- Raw architecture: Response_reg[9-119] | GGDEF[150-305]
- Domain count: 2
- Matched identifier: RROC_0544688
- Positioned domains: Response_reg 9-119 ; Response_reg 9-119 ; GGDEF 150-305 ; GGDEF 150-305
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS20655
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 877 527 · GCF_020215665
AssemblyASM2021566v1 · Complete Genomereference genome · haploid
Genome composition6 247 046 bp · 46,5% GCBlautia parvula
Signal transduction countsGenes 262 · HK 135 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key