1 Response_reg#1
9-119 aa · 111 aa · 35.5% of protein
Raw token
Response_reg:9:1.28e-24:119:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA40_RS20655
Response regulator, PleD family
Blautia sp. OF01-4LB · GCF_003478165
ClassRRTypePleDLength313 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003478165#DXA40_RS20655Stable P2CS identifier used across views.
GenomeGCF_003478165Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regGGDEF
Protein length313 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage267 / 313 aa (85.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa313 aa
Domain-by-domain annotation2 items
2 GGDEF#2
150-305 aa · 156 aa · 49.8% of protein
Raw token
GGDEF:150:7.63e-42:305:160:160- Raw architecture: Response_reg:9:1.28e-24:119:111:111#GGDEF:150:7.63e-42:305:160:160
- Domain description: 1 Response_reg,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003478165::NZ_QUER01000016.1::G00043
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span51628-54634Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA40_20645RefSeq proteinWP_103730953.1
Context group ID
GCF_003478165::NZ_QUER01000016.1::G00043Context members
DXA40_RS20650DXA40_RS20655
Partner locus tags
DXA40_RS20650DXA40_RS20655
Partner old locus tags
DXA40_20640DXA40_20645
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_103730953.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1DJ63Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1DJ63_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA40_RS20655Primary locus identifier stored in the genes table.
Old locus tagDXA40_20645Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUER01000016.1Sequence record reported by the local genomic context database.
Genomic interval53 693-54 634 nt942 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span51 628-54 634 ntGCF_003478165::NZ_QUER01000016.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478165::NZ_QUER01000016.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUER01000016.1All displayed genes belong to this local TCS context.
Neighborhood span51 628-54 634 nt3 007 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 628 nt54 634 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA40_RS20650GCF_003478165#DXA40_RS20650
HKCheA
51 628-53 679 nt · Reverse (-)
DXA40_RS20655GCF_003478165#DXA40_RS20655
RRPleDCurrent focus
53 693-54 634 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS20655The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0544688
Simplified PFAM architecture for RROC_0544688
PFAM domain coverage: 267 / 313 aa (85.3%)
1 aa313 aa
Response_regGGDEF
- Simplified architecture: Response_reg + GGDEF
- Raw architecture: Response_reg[9-119] | GGDEF[150-305]
- Domain count: 2
- Matched identifier: RROC_0544688
- Positioned domains: Response_reg 9-119 ; Response_reg 9-119 ; GGDEF 150-305 ; GGDEF 150-305
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS20655
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 286 · GCF_003478165
AssemblyASM347816v1 · Scaffoldhaploid
Genome composition6 349 015 bp · 46,5% GCBlautia sp. OF01-4LB
Signal transduction countsGenes 264 · HK 135 · RR 125CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key