1 HAMP#1
46-115 aa · 70 aa · 19.5% of protein
Raw token
HAMP:46:0.00000000000157:115:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LC508_RS01135
Histidine kinase, Classic
Blautia parvula · GCF_020215665
ClassHKTypeClassicLength359 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020215665#LC508_RS01135Stable P2CS identifier used across views.
GenomeGCF_020215665Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length359 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 359 aa (67.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa359 aa
Domain-by-domain annotation3 items
2 HisKA#2
140-205 aa · 66 aa · 18.4% of protein
Raw token
HisKA:140:0.0000000000000945:205:66:643 HATPase_c#3
251-356 aa · 106 aa · 29.5% of protein
Raw token
HATPase_c:251:1.21e-18:356:107:109- Raw architecture: HAMP:46:0.00000000000157:115:70:69#HisKA:140:0.0000000000000945:205:66:64#HATPase_c:251:1.21e-18:356:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020215665::NZ_CP084061.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span213632-215379Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLC508_01135RefSeq proteinWP_330659987.1
Context group ID
GCF_020215665::NZ_CP084061.1::G00004Context members
LC508_RS01135LC508_RS01140
Partner locus tags
LC508_RS01135LC508_RS01140
Partner old locus tags
LC508_01135LC508_01140
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330659987.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLC508_RS01135Primary locus identifier stored in the genes table.
Old locus tagLC508_01135Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP084061.1Sequence record reported by the local genomic context database.
Genomic interval213 632-214 711 nt1 080 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span213 632-215 379 ntGCF_020215665::NZ_CP084061.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020215665::NZ_CP084061.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP084061.1All displayed genes belong to this local TCS context.
Neighborhood span213 632-215 379 nt1 748 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
213 632 nt215 379 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LC508_RS01135GCF_020215665#LC508_RS01135
HKClassicCurrent focus
213 632-214 711 nt · Reverse (-)
LC508_RS01140GCF_020215665#LC508_RS01140
RROmpR
214 714-215 379 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020215665#LC508_RS01135The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2755719
Simplified PFAM architecture for HKOC_2755719
PFAM domain coverage: 224 / 359 aa (62.4%)
1 aa359 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[63-115] | HisKA[140-205] | HATPase_c[252-356]
- Domain count: 3
- Matched identifier: HKOC_2755719
- Positioned domains: HAMP 63-115 ; HisKA 140-205 ; HATPase_c 252-356
Cluster members and taxonomy
Representative gene: GCF_020215665#LC508_RS01135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 877 527 · GCF_020215665
AssemblyASM2021566v1 · Complete Genomereference genome · haploid
Genome composition6 247 046 bp · 46,5% GCBlautia parvula
Signal transduction countsGenes 262 · HK 135 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key