1 HAMP#1
379-434 aa · 56 aa · 4.3% of protein
Raw token
HAMP:379:0.000000362:434:56:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LC508_RS01635
Histidine kinase, Hybrid
Blautia parvula · GCF_020215665
ClassHKTypeHybridLength1310 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020215665#LC508_RS01635Stable P2CS identifier used across views.
GenomeGCF_020215665Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPPACGGDEFHisKAHATPase_cResponse_reg
Protein length1310 aaLength used to scale native and Biotite-like views.
Annotated domains66 with usable coordinates.
Domain coverage550 / 1310 aa (42.0%)Merged over positioned domains only.
Domain description1 HAMP,1 PAC,1 GGDEF,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1310 aa
Domain-by-domain annotation6 items
2 PAC#2
529-571 aa · 43 aa · 3.3% of protein
Raw token
PAC:529:0.0000436:571:43:433 GGDEF#3
582-736 aa · 155 aa · 11.8% of protein
Raw token
GGDEF:582:1.09e-17:736:168:1604 HisKA#4
935-1001 aa · 67 aa · 5.1% of protein
Raw token
HisKA:935:1.19e-19:1001:67:645 HATPase_c#5
1047-1158 aa · 112 aa · 8.5% of protein
Raw token
HATPase_c:1047:2.24e-29:1158:112:1096 Response_reg#6
1186-1302 aa · 117 aa · 8.9% of protein
Raw token
Response_reg:1186:2.06e-28:1302:117:111- Raw architecture: HAMP:379:0.000000362:434:56:69#PAC:529:0.0000436:571:43:43#GGDEF:582:1.09e-17:736:168:160#HisKA:935:1.19e-19:1001:67:64#HATPase_c:1047:2.24e-29:1158:112:109#Response_reg:1186:2.06e-28:1302:117:111
- Domain description: 1 HAMP,1 PAC,1 GGDEF,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020215665::NZ_CP084061.1::G00007
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span327818-331750Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLC508_01635RefSeq proteinWP_103731177.1
Context group ID
GCF_020215665::NZ_CP084061.1::G00007Context members
LC508_RS01635
Partner locus tags
LC508_RS01635
Partner old locus tags
LC508_01635
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_103731177.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7FAP3Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7FAP3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLC508_RS01635Primary locus identifier stored in the genes table.
Old locus tagLC508_01635Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP084061.1Sequence record reported by the local genomic context database.
Genomic interval327 818-331 750 nt3 933 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span327 818-331 750 ntGCF_020215665::NZ_CP084061.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020215665::NZ_CP084061.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP084061.1All displayed genes belong to this local TCS context.
Neighborhood span327 818-331 750 nt3 933 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
327 818 nt331 750 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LC508_RS01635GCF_020215665#LC508_RS01635
HKHybridCurrent focus
327 818-331 750 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS16255Use this link to inspect the representative gene detail.
PFAM architectureGGDEF + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0120653
Simplified PFAM architecture for HKOC_0120653
PFAM domain coverage: 454 / 1310 aa (34.7%)
1 aa1310 aa
GGDEFHisKAHATPase_cResponse_reg
- Simplified architecture: GGDEF + HisKA + HATPase_c + Response_reg
- Raw architecture: GGDEF[582-737] | HisKA[935-1001] | HATPase_c[1047-1160] | Response_reg[1186-1302]
- Domain count: 4
- Matched identifier: HKOC_0120653
- Positioned domains: GGDEF 582-737 ; HisKA 935-1001 ; HATPase_c 1047-1160 ; Response_reg 1186-1302
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS16255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 877 527 · GCF_020215665
AssemblyASM2021566v1 · Complete Genomereference genome · haploid
Genome composition6 247 046 bp · 46,5% GCBlautia parvula
Signal transduction countsGenes 262 · HK 135 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key