1 Response_reg#1
17-118 aa · 102 aa · 44.0% of protein
Raw token
Response_reg:17:2.17e-16:118:102:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JS536_RS03180
Response regulator NarL family
Bifidobacterium sp. SO4 · GCF_018555355
ClassRRTypeNarLLength232 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_018555355#JS536_RS03180Stable P2CS identifier used across views.
GenomeGCF_018555355Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 232 aa (66.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
169-221 aa · 53 aa · 22.8% of protein
Raw token
HTH_LUXR:169:0.000000000000037:221:53:58- Raw architecture: Response_reg:17:2.17e-16:118:102:111#HTH_LUXR:169:0.000000000000037:221:53:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_018555355::NZ_JAFEJP010000003.1::G00018
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span50935-51633Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJS536_03175RefSeq proteinWP_214355745.1
Context group ID
GCF_018555355::NZ_JAFEJP010000003.1::G00018Context members
JS536_RS03180
Partner locus tags
JS536_RS03180
Partner old locus tags
JS536_03175
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_214355745.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJS536_RS03180Primary locus identifier stored in the genes table.
Old locus tagJS536_03175Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAFEJP010000003.1Sequence record reported by the local genomic context database.
Genomic interval50 935-51 633 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span50 935-51 633 ntGCF_018555355::NZ_JAFEJP010000003.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018555355::NZ_JAFEJP010000003.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFEJP010000003.1All displayed genes belong to this local TCS context.
Neighborhood span50 935-51 633 nt699 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
50 935 nt51 633 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JS536_RS03180GCF_018555355#JS536_RS03180
RRNarLCurrent focus
50 935-51 633 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018555355#JS536_RS03180The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1137835
Simplified PFAM architecture for RROC_1137835
PFAM domain coverage: 160 / 232 aa (69.0%)
1 aa232 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[17-123] | GerE[170-222]
- Domain count: 2
- Matched identifier: RROC_1137835
- Positioned domains: Response_reg 17-123 ; GerE 170-222
Cluster members and taxonomy
Representative gene: GCF_018555355#JS536_RS03180
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 809 030 · GCF_018555355
AssemblyASM1855535v1 · Contighaploid
Genome composition2 912 164 bp · 63,0% GCBifidobacterium sp. SO4
Signal transduction countsGenes 42 · HK 15 · RR 25CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key