1 Response_reg#1
4-108 aa · 105 aa · 43.6% of protein
Raw token
Response_reg:4:1.36e-25:108:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JS536_RS02915
Response regulator LytTR family
Bifidobacterium sp. SO4 · GCF_018555355
ClassRRTypeLytTRLength241 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_018555355#JS536_RS02915Stable P2CS identifier used across views.
GenomeGCF_018555355Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage197 / 241 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
141-232 aa · 92 aa · 38.2% of protein
Raw token
LytTR:141:6.74e-23:232:97:98- Raw architecture: Response_reg:4:1.36e-25:108:108:111#LytTR:141:6.74e-23:232:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_018555355::NZ_JAFEJP010000002.1::G00010
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span351102-351827Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJS536_02910RefSeq proteinWP_214355687.1
Context group ID
GCF_018555355::NZ_JAFEJP010000002.1::G00010Context members
JS536_RS02915
Partner locus tags
JS536_RS02915
Partner old locus tags
JS536_02910
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_214355687.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJS536_RS02915Primary locus identifier stored in the genes table.
Old locus tagJS536_02910Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAFEJP010000002.1Sequence record reported by the local genomic context database.
Genomic interval351 102-351 827 nt726 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span351 102-351 827 ntGCF_018555355::NZ_JAFEJP010000002.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018555355::NZ_JAFEJP010000002.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFEJP010000002.1All displayed genes belong to this local TCS context.
Neighborhood span351 102-351 827 nt726 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
351 102 nt351 827 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JS536_RS02915GCF_018555355#JS536_RS02915
RRLytTRCurrent focus
351 102-351 827 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018555355#JS536_RS02915The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0872084
Simplified PFAM architecture for RROC_0872084
PFAM domain coverage: 197 / 241 aa (81.7%)
1 aa241 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-109] | LytTR[142-232]
- Domain count: 2
- Matched identifier: RROC_0872084
- Positioned domains: Response_reg 4-109 ; LytTR 142-232
Cluster members and taxonomy
Representative gene: GCF_018555355#JS536_RS02915
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 809 030 · GCF_018555355
AssemblyASM1855535v1 · Contighaploid
Genome composition2 912 164 bp · 63,0% GCBifidobacterium sp. SO4
Signal transduction countsGenes 42 · HK 15 · RR 25CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key