1 HisKA#1
180-244 aa · 65 aa · 15.0% of protein
Raw token
HisKA:180:0.0000000000294:244:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JS536_RS01650
Histidine kinase, Classic
Bifidobacterium sp. SO4 · GCF_018555355
ClassHKTypeClassicLength434 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_018555355#JS536_RS01650Stable P2CS identifier used across views.
GenomeGCF_018555355Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length434 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 434 aa (41.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
308-420 aa · 113 aa · 26.0% of protein
Raw token
HATPase_c:308:7.77e-29:420:113:109- Raw architecture: HisKA:180:0.0000000000294:244:65:64#HATPase_c:308:7.77e-29:420:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_018555355::NZ_JAFEJP010000002.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span42387-44652Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJS536_01645RefSeq proteinWP_214355537.1
Context group ID
GCF_018555355::NZ_JAFEJP010000002.1::G00009Context members
JS536_RS01650JS536_RS01655
Partner locus tags
JS536_RS01650JS536_RS01655
Partner old locus tags
JS536_01645JS536_01650
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_214355537.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJS536_RS01650Primary locus identifier stored in the genes table.
Old locus tagJS536_01645Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAFEJP010000002.1Sequence record reported by the local genomic context database.
Genomic interval42 387-43 691 nt1 305 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span42 387-44 652 ntGCF_018555355::NZ_JAFEJP010000002.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_018555355::NZ_JAFEJP010000002.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAFEJP010000002.1All displayed genes belong to this local TCS context.
Neighborhood span42 387-44 652 nt2 266 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 387 nt44 652 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JS536_RS01650GCF_018555355#JS536_RS01650
HKClassicCurrent focus
42 387-43 691 nt · Forward (+)
JS536_RS01655GCF_018555355#JS536_RS01655
RROmpR
43 948-44 652 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018555355#JS536_RS01650The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2134552
Simplified PFAM architecture for HKOC_2134552
PFAM domain coverage: 175 / 434 aa (40.3%)
1 aa434 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[180-243] | HATPase_c[309-419]
- Domain count: 2
- Matched identifier: HKOC_2134552
- Positioned domains: HisKA 180-243 ; HATPase_c 309-419
Cluster members and taxonomy
Representative gene: GCF_018555355#JS536_RS01650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 809 030 · GCF_018555355
AssemblyASM1855535v1 · Contighaploid
Genome composition2 912 164 bp · 63,0% GCBifidobacterium sp. SO4
Signal transduction countsGenes 42 · HK 15 · RR 25CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key