1 HAMP#1
56-126 aa · 71 aa · 19.9% of protein
Raw token
HAMP:56:9.49e-19:126:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BSD967_RS01960
Histidine kinase, Classic
Bifidobacterium saguini · GCF_017378515
ClassHKTypeClassicLength356 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_017378515#BSD967_RS01960Stable P2CS identifier used across views.
GenomeGCF_017378515Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length356 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 356 aa (69.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa356 aa
Domain-by-domain annotation3 items
2 HisKA#2
130-194 aa · 65 aa · 18.3% of protein
Raw token
HisKA:130:4.03e-16:194:65:643 HATPase_c#3
239-349 aa · 111 aa · 31.2% of protein
Raw token
HATPase_c:239:4.56e-22:349:112:109- Raw architecture: HAMP:56:9.49e-19:126:71:69#HisKA:130:4.03e-16:194:65:64#HATPase_c:239:4.56e-22:349:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_017378515::NZ_CP071732.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span416160-417952Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBSD967_01960RefSeq proteinWP_033890366.1
Context group ID
GCF_017378515::NZ_CP071732.1::G00006Context members
BSD967_RS01955BSD967_RS01960
Partner locus tags
BSD967_RS01955BSD967_RS01960
Partner old locus tags
BSD967_01955BSD967_01960
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033890366.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX7SE66Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX7SE66_9BIFIDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBSD967_RS01960Primary locus identifier stored in the genes table.
Old locus tagBSD967_01960Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP071732.1Sequence record reported by the local genomic context database.
Genomic interval416 882-417 952 nt1 071 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span416 160-417 952 ntGCF_017378515::NZ_CP071732.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_017378515::NZ_CP071732.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP071732.1All displayed genes belong to this local TCS context.
Neighborhood span416 160-417 952 nt1 793 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
416 160 nt417 952 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BSD967_RS01955GCF_017378515#BSD967_RS01955
RROmpR
416 160-416 882 nt · Forward (+)
BSD967_RS01960GCF_017378515#BSD967_RS01960
HKClassicCurrent focus
416 882-417 952 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741715#BISA_RS04045Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2770592
Simplified PFAM architecture for HKOC_2770592
PFAM domain coverage: 229 / 356 aa (64.3%)
1 aa356 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[73-125] | HisKA[131-194] | HATPase_c[239-350]
- Domain count: 3
- Matched identifier: HKOC_2770592
- Positioned domains: HAMP 73-125 ; HisKA 131-194 ; HATPase_c 239-350
Cluster members and taxonomy
Representative gene: GCF_000741715#BISA_RS04045
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 762 210 · GCF_017378515
AssemblyASM1737851v1 · Chromosomereference genome · haploid
Genome composition2 739 637 bp · 56,5% GCBifidobacterium saguini
Signal transduction countsGenes 33 · HK 15 · RR 17CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key