1 Response_reg#1
36-148 aa · 113 aa · 46.5% of protein
Raw token
Response_reg:36:0.00000000000296:148:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BSD967_RS01605
Response regulator NarL family
Bifidobacterium saguini · GCF_017378515
ClassRRTypeNarLLength243 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_017378515#BSD967_RS01605Stable P2CS identifier used across views.
GenomeGCF_017378515Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length243 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 243 aa (68.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa243 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
181-234 aa · 54 aa · 22.2% of protein
Raw token
HTH_LUXR:181:0.000000000000929:234:54:58- Raw architecture: Response_reg:36:0.00000000000296:148:114:111#HTH_LUXR:181:0.000000000000929:234:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_017378515::NZ_CP071732.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span334718-335449Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBSD967_01605RefSeq proteinWP_161786507.1
Context group ID
GCF_017378515::NZ_CP071732.1::G00004Context members
BSD967_RS01605
Partner locus tags
BSD967_RS01605
Partner old locus tags
BSD967_01605
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_161786507.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX7SE06Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX7SE06_9BIFIDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBSD967_RS01605Primary locus identifier stored in the genes table.
Old locus tagBSD967_01605Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP071732.1Sequence record reported by the local genomic context database.
Genomic interval334 718-335 449 nt732 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span334 718-335 449 ntGCF_017378515::NZ_CP071732.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_017378515::NZ_CP071732.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP071732.1All displayed genes belong to this local TCS context.
Neighborhood span334 718-335 449 nt732 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
334 718 nt335 449 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BSD967_RS01605GCF_017378515#BSD967_RS01605
RRNarLCurrent focus
334 718-335 449 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741715#BISA_RS10020Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0826287
Simplified PFAM architecture for RROC_0826287
PFAM domain coverage: 159 / 243 aa (65.4%)
1 aa243 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[36-141] | GerE[181-233]
- Domain count: 2
- Matched identifier: RROC_0826287
- Positioned domains: Response_reg 36-141 ; Response_reg 36-141 ; GerE 181-233 ; GerE 181-233
Cluster members and taxonomy
Representative gene: GCF_000741715#BISA_RS10020
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 762 210 · GCF_017378515
AssemblyASM1737851v1 · Chromosomereference genome · haploid
Genome composition2 739 637 bp · 56,5% GCBifidobacterium saguini
Signal transduction countsGenes 33 · HK 15 · RR 17CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key