1 HisKA_3#1
237-300 aa · 64 aa · 14.3% of protein
Raw token
HisKA_3:237:5.07e-16:300:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BSD967_RS01060
Histidine kinase, Classic
Bifidobacterium saguini · GCF_017378515
ClassHKTypeClassicLength449 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_017378515#BSD967_RS01060Stable P2CS identifier used across views.
GenomeGCF_017378515Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length449 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 449 aa (36.1%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa449 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
344-441 aa · 98 aa · 21.8% of protein
Raw token
HATPase_c:344:0.00000000247:441:104:109- Raw architecture: HisKA_3:237:5.07e-16:300:64:68#HATPase_c:344:0.00000000247:441:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_017378515::NZ_CP071732.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span236351-238350Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBSD967_01060RefSeq proteinWP_033891019.1
Context group ID
GCF_017378515::NZ_CP071732.1::G00002Context members
BSD967_RS01060BSD967_RS01065
Partner locus tags
BSD967_RS01060BSD967_RS01065
Partner old locus tags
BSD967_01060BSD967_01065
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033891019.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX7SCN2Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX7SCN2_9BIFIDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBSD967_RS01060Primary locus identifier stored in the genes table.
Old locus tagBSD967_01060Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP071732.1Sequence record reported by the local genomic context database.
Genomic interval236 351-237 700 nt1 350 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span236 351-238 350 ntGCF_017378515::NZ_CP071732.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_017378515::NZ_CP071732.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP071732.1All displayed genes belong to this local TCS context.
Neighborhood span236 351-238 350 nt2 000 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
236 351 nt238 350 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BSD967_RS01060GCF_017378515#BSD967_RS01060
HKClassicCurrent focus
236 351-237 700 nt · Forward (+)
BSD967_RS01065GCF_017378515#BSD967_RS01065
RRNarL
237 697-238 350 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741715#BISA_RS06990Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1974356
Simplified PFAM architecture for HKOC_1974356
PFAM domain coverage: 66 / 449 aa (14.7%)
1 aa449 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[237-302]
- Domain count: 1
- Matched identifier: HKOC_1974356
- Positioned domains: HisKA_3 237-302
Cluster members and taxonomy
Representative gene: GCF_000741715#BISA_RS06990
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 762 210 · GCF_017378515
AssemblyASM1737851v1 · Chromosomereference genome · haploid
Genome composition2 739 637 bp · 56,5% GCBifidobacterium saguini
Signal transduction countsGenes 33 · HK 15 · RR 17CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key