1 HAMP#1
158-228 aa · 71 aa · 15.1% of protein
Raw token
HAMP:158:0.00000000445:228:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BSD967_RS00435
Histidine kinase, Classic
Bifidobacterium saguini · GCF_017378515
ClassHKTypeClassicLength469 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_017378515#BSD967_RS00435Stable P2CS identifier used across views.
GenomeGCF_017378515Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length469 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage259 / 469 aa (55.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa469 aa
Domain-by-domain annotation3 items
2 HisKA#2
232-298 aa · 67 aa · 14.3% of protein
Raw token
HisKA:232:0.000000000117:298:67:643 HATPase_c#3
349-469 aa · 121 aa · 25.8% of protein
Raw token
HATPase_c:349:0.000000000736:469:121:109- Raw architecture: HAMP:158:0.00000000445:228:71:69#HisKA:232:0.000000000117:298:67:64#HATPase_c:349:0.000000000736:469:121:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_017378515::NZ_CP071732.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span84171-86327Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBSD967_00435RefSeq proteinWP_051917379.1
Context group ID
GCF_017378515::NZ_CP071732.1::G00001Context members
BSD967_RS00430BSD967_RS00435
Partner locus tags
BSD967_RS00430BSD967_RS00435
Partner old locus tags
BSD967_00430BSD967_00435
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_051917379.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX7SEV8Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX7SEV8_9BIFIDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBSD967_RS00435Primary locus identifier stored in the genes table.
Old locus tagBSD967_00435Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP071732.1Sequence record reported by the local genomic context database.
Genomic interval84 918-86 327 nt1 410 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span84 171-86 327 ntGCF_017378515::NZ_CP071732.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_017378515::NZ_CP071732.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP071732.1All displayed genes belong to this local TCS context.
Neighborhood span84 171-86 327 nt2 157 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
84 171 nt86 327 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BSD967_RS00430GCF_017378515#BSD967_RS00430
RROmpR
84 171-84 842 nt · Forward (+)
BSD967_RS00435GCF_017378515#BSD967_RS00435
HKClassicCurrent focus
84 918-86 327 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741715#BISA_RS06360Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1727630
Simplified PFAM architecture for HKOC_1727630
PFAM domain coverage: 225 / 469 aa (48.0%)
1 aa469 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[178-227] | HisKA[233-298] | HATPase_c[351-459]
- Domain count: 3
- Matched identifier: HKOC_1727630
- Positioned domains: HAMP 178-227 ; HisKA 233-298 ; HATPase_c 351-459
Cluster members and taxonomy
Representative gene: GCF_000741715#BISA_RS06360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 762 210 · GCF_017378515
AssemblyASM1737851v1 · Chromosomereference genome · haploid
Genome composition2 739 637 bp · 56,5% GCBifidobacterium saguini
Signal transduction countsGenes 33 · HK 15 · RR 17CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key