1 Response_reg#1
6-115 aa · 110 aa · 47.2% of protein
Raw token
Response_reg:6:7.52e-36:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFT89_RS01875
Response regulator OmpR family
Bacillus sp. TH25 · GCF_016650935
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016650935#JFT89_RS01875Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 233 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 33.0% of protein
Raw token
Trans_reg_C:153:7.78e-38:229:77:77- Raw architecture: Response_reg:6:7.52e-36:115:111:111#Trans_reg_C:153:7.78e-38:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016650935::NZ_JAEKEU010000005.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5044-7234Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFT89_01875RefSeq proteinWP_201039403.1
Context group ID
GCF_016650935::NZ_JAEKEU010000005.1::G00005Context members
JFT89_RS01870JFT89_RS01875
Partner locus tags
JFT89_RS01870JFT89_RS01875
Partner old locus tags
JFT89_01870JFT89_01875
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_201039403.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFT89_RS01875Primary locus identifier stored in the genes table.
Old locus tagJFT89_01875Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKEU010000005.1Sequence record reported by the local genomic context database.
Genomic interval6 533-7 234 nt702 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 044-7 234 ntGCF_016650935::NZ_JAEKEU010000005.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016650935::NZ_JAEKEU010000005.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKEU010000005.1All displayed genes belong to this local TCS context.
Neighborhood span5 044-7 234 nt2 191 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 044 nt7 234 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JFT89_RS01870GCF_016650935#JFT89_RS01870
HKClassic
5 044-6 549 nt · Reverse (-)
JFT89_RS01875GCF_016650935#JFT89_RS01875
RROmpRCurrent focus
6 533-7 234 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016650935#JFT89_RS01875The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1097612
Simplified PFAM architecture for RROC_1097612
PFAM domain coverage: 186 / 233 aa (79.8%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[153-228]
- Domain count: 2
- Matched identifier: RROC_1097612
- Positioned domains: Response_reg 6-115 ; Trans_reg_C 153-228
Cluster members and taxonomy
Representative gene: GCF_016650935#JFT89_RS01875
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 391 · GCF_016650935
AssemblyASM1665093v1 · Contighaploid
Genome composition5 862 716 bp · 35,5% GCBacillus sp. TH25
Signal transduction countsGenes 111 · HK 60 · RR 50CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key