1 Response_reg#1
6-115 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:6:4.92e-36:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFT89_RS01820
Response regulator OmpR family
Bacillus sp. TH25 · GCF_016650935
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016650935#JFT89_RS01820Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 237 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-230 aa · 77 aa · 32.5% of protein
Raw token
Trans_reg_C:154:1.06e-35:230:77:77- Raw architecture: Response_reg:6:4.92e-36:115:111:111#Trans_reg_C:154:1.06e-35:230:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016650935::NZ_JAEKEU010000004.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12557-14273Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFT89_01820RefSeq proteinWP_000651971.1
Context group ID
GCF_016650935::NZ_JAEKEU010000004.1::G00004Context members
JFT89_RS01820JFT89_RS01825
Partner locus tags
JFT89_RS01820JFT89_RS01825
Partner old locus tags
JFT89_01820JFT89_01825
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000651971.1Primary protein accession used for annex mappings.
UniProt accessionA0A2A7YJR2Primary UniProt accession resolved in the annex database.
UniProt IDA0A2A7YJR2_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFT89_RS01820Primary locus identifier stored in the genes table.
Old locus tagJFT89_01820Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKEU010000004.1Sequence record reported by the local genomic context database.
Genomic interval12 557-13 270 nt714 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span12 557-14 273 ntGCF_016650935::NZ_JAEKEU010000004.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016650935::NZ_JAEKEU010000004.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKEU010000004.1All displayed genes belong to this local TCS context.
Neighborhood span12 557-14 273 nt1 717 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 557 nt14 273 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JFT89_RS01820GCF_016650935#JFT89_RS01820
RROmpRCurrent focus
12 557-13 270 nt · Forward (+)
JFT89_RS01825GCF_016650935#JFT89_RS01825
HKClassic
13 260-14 273 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000398965#IGA_RS16240Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0962658
Simplified PFAM architecture for RROC_0962658
PFAM domain coverage: 187 / 237 aa (78.9%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[154-230]
- Domain count: 2
- Matched identifier: RROC_0962658
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 154-230 ; Trans_reg_C 154-230
Cluster members and taxonomy
Representative gene: GCF_000398965#IGA_RS16240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 391 · GCF_016650935
AssemblyASM1665093v1 · Contighaploid
Genome composition5 862 716 bp · 35,5% GCBacillus sp. TH25
Signal transduction countsGenes 111 · HK 60 · RR 50CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key