1 Response_reg#1
6-116 aa · 111 aa · 52.6% of protein
Raw token
Response_reg:6:5.85e-37:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFT89_RS00305
Response regulator NarL family
Bacillus sp. TH25 · GCF_016650935
ClassRRTypeNarLLength211 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016650935#JFT89_RS00305Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length211 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 211 aa (78.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
151-205 aa · 55 aa · 26.1% of protein
Raw token
HTH_LUXR:151:5.57e-24:205:55:58- Raw architecture: Response_reg:6:5.85e-37:116:111:111#HTH_LUXR:151:5.57e-24:205:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016650935::NZ_JAEKEU010000002.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span46164-47911Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFT89_00305RefSeq proteinWP_002065204.1
Context group ID
GCF_016650935::NZ_JAEKEU010000002.1::G00002Context members
JFT89_RS00305JFT89_RS00310
Partner locus tags
JFT89_RS00305JFT89_RS00310
Partner old locus tags
JFT89_00305JFT89_00310
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002065204.1Primary protein accession used for annex mappings.
UniProt accessionC2XTM0Primary UniProt accession resolved in the annex database.
UniProt IDC2XTM0_BACMYDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFT89_RS00305Primary locus identifier stored in the genes table.
Old locus tagJFT89_00305Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKEU010000002.1Sequence record reported by the local genomic context database.
Genomic interval46 164-46 799 nt636 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span46 164-47 911 ntGCF_016650935::NZ_JAEKEU010000002.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016650935::NZ_JAEKEU010000002.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKEU010000002.1All displayed genes belong to this local TCS context.
Neighborhood span46 164-47 911 nt1 748 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 164 nt47 911 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JFT89_RS00305GCF_016650935#JFT89_RS00305
RRNarLCurrent focus
46 164-46 799 nt · Reverse (-)
JFT89_RS00310GCF_016650935#JFT89_RS00310
HKClassic
46 814-47 911 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161335#BCERE0026_RS10265Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2003572
Simplified PFAM architecture for RROC_2003572
PFAM domain coverage: 167 / 211 aa (79.1%)
1 aa211 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-116] | GerE[150-205]
- Domain count: 2
- Matched identifier: RROC_2003572
- Positioned domains: Response_reg 6-116 ; Response_reg 6-116 ; GerE 150-205 ; GerE 150-205
Cluster members and taxonomy
Representative gene: GCF_000161335#BCERE0026_RS10265
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 391 · GCF_016650935
AssemblyASM1665093v1 · Contighaploid
Genome composition5 862 716 bp · 35,5% GCBacillus sp. TH25
Signal transduction countsGenes 111 · HK 60 · RR 50CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key