1 HAMP#1
188-257 aa · 70 aa · 11.5% of protein
Raw token
HAMP:188:1.49e-16:257:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JDS87_RS12150
Histidine kinase, Classic
Bacillus cereus · GCF_016483475
ClassHKTypeClassicLength611 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016483475#JDS87_RS12150Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPPAS_9HisKAHATPase_c
Protein length611 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage347 / 611 aa (56.8%)Merged over positioned domains only.
Domain description1 HAMP,1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa611 aa
Domain-by-domain annotation4 items
2 PAS_9#2
277-373 aa · 97 aa · 15.9% of protein
Raw token
PAS_9:277:0.00000000549:373:102:1023 HisKA#3
380-446 aa · 67 aa · 11.0% of protein
Raw token
HisKA:380:3.6e-18:446:67:644 HATPase_c#4
492-604 aa · 113 aa · 18.5% of protein
Raw token
HATPase_c:492:6.09e-36:604:113:109- Raw architecture: HAMP:188:1.49e-16:257:70:69#PAS_9:277:0.00000000549:373:102:102#HisKA:380:3.6e-18:446:67:64#HATPase_c:492:6.09e-36:604:113:109
- Domain description: 1 HAMP,1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016483475::NZ_JAEHBV010000014.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span655-3201Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJDS87_12180RefSeq proteinWP_199673506.1
Context group ID
GCF_016483475::NZ_JAEHBV010000014.1::G00013Context members
JDS87_RS12145JDS87_RS12150
Partner locus tags
JDS87_RS12145JDS87_RS12150
Partner old locus tags
JDS87_12175JDS87_12180
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_199673506.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJDS87_RS12150Primary locus identifier stored in the genes table.
Old locus tagJDS87_12180Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEHBV010000014.1Sequence record reported by the local genomic context database.
Genomic interval1 366-3 201 nt1 836 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span655-3 201 ntGCF_016483475::NZ_JAEHBV010000014.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016483475::NZ_JAEHBV010000014.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEHBV010000014.1All displayed genes belong to this local TCS context.
Neighborhood span655-3 201 nt2 547 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
655 nt3 201 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JDS87_RS12145GCF_016483475#JDS87_RS12145
RROmpR
655-1 362 nt · Forward (+)
JDS87_RS12150GCF_016483475#JDS87_RS12150
HKClassicCurrent focus
1 366-3 201 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016483475#JDS87_RS12150The current gene is the representative for this cluster.
PFAM architectureCache_WalK + HAMP + PAS + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1002501
Simplified PFAM architecture for HKOC_1002501
PFAM domain coverage: 374 / 611 aa (61.2%)
1 aa611 aa
Cache_WalKHAMPPASHisKAHATPase_c
- Simplified architecture: Cache_WalK + HAMP + PAS + HisKA + HATPase_c
- Raw architecture: Cache_WalK[78-172] | HAMP[205-257] | PAS[269-317] | HisKA[381-446] | HATPase_c[493-603]
- Domain count: 5
- Matched identifier: HKOC_1002501
- Positioned domains: Cache_WalK 78-172 ; HAMP 205-257 ; PAS 269-317 ; HisKA 381-446 ; HATPase_c 493-603
Cluster members and taxonomy
Representative gene: GCF_016483475#JDS87_RS12150
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_016483475
AssemblyASM1648347v1 · Contighaploid
Genome composition6 258 662 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 107 · HK 60 · RR 46CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key