1 HAMP#1
174-243 aa · 70 aa · 14.4% of protein
Raw token
HAMP:174:9.69e-17:243:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JDS87_RS01825
Histidine kinase, Classic
Bacillus cereus · GCF_016483475
ClassHKTypeClassicLength485 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016483475#JDS87_RS01825Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length485 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 485 aa (50.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa485 aa
Domain-by-domain annotation3 items
2 HisKA#2
255-319 aa · 65 aa · 13.4% of protein
Raw token
HisKA:255:0.00000000000000125:319:65:643 HATPase_c#3
368-477 aa · 110 aa · 22.7% of protein
Raw token
HATPase_c:368:2.51e-31:477:110:109- Raw architecture: HAMP:174:9.69e-17:243:70:69#HisKA:255:0.00000000000000125:319:65:64#HATPase_c:368:2.51e-31:477:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016483475::NZ_JAEHBV010000002.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span60049-62197Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJDS87_01840RefSeq proteinWP_199671870.1
Context group ID
GCF_016483475::NZ_JAEHBV010000002.1::G00021Context members
JDS87_RS01825JDS87_RS01830
Partner locus tags
JDS87_RS01825JDS87_RS01830
Partner old locus tags
JDS87_01840JDS87_01845
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_199671870.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJDS87_RS01825Primary locus identifier stored in the genes table.
Old locus tagJDS87_01840Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEHBV010000002.1Sequence record reported by the local genomic context database.
Genomic interval60 049-61 506 nt1 458 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span60 049-62 197 ntGCF_016483475::NZ_JAEHBV010000002.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016483475::NZ_JAEHBV010000002.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEHBV010000002.1All displayed genes belong to this local TCS context.
Neighborhood span60 049-62 197 nt2 149 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
60 049 nt62 197 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JDS87_RS01825GCF_016483475#JDS87_RS01825
HKClassicCurrent focus
60 049-61 506 nt · Forward (+)
JDS87_RS01830GCF_016483475#JDS87_RS01830
RROmpR
61 508-62 197 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016483475#JDS87_RS01825The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1579339
Simplified PFAM architecture for HKOC_1579339
PFAM domain coverage: 227 / 485 aa (46.8%)
1 aa485 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[191-242] | HisKA[255-319] | HATPase_c[369-478]
- Domain count: 3
- Matched identifier: HKOC_1579339
- Positioned domains: HAMP 191-242 ; HisKA 255-319 ; HATPase_c 369-478
Cluster members and taxonomy
Representative gene: GCF_016483475#JDS87_RS01825
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_016483475
AssemblyASM1648347v1 · Contighaploid
Genome composition6 258 662 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 107 · HK 60 · RR 46CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key