1 HAMP#1
50-119 aa · 70 aa · 19.8% of protein
Raw token
HAMP:50:0.0000000000145:119:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JDS87_RS00860
Histidine kinase, Classic
Bacillus cereus · GCF_016483475
ClassHKTypeClassicLength353 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016483475#JDS87_RS00860Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length353 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 353 aa (67.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa353 aa
Domain-by-domain annotation3 items
2 HisKA#2
130-191 aa · 62 aa · 17.6% of protein
Raw token
HisKA:130:0.000000000000438:191:62:643 HATPase_c#3
243-349 aa · 107 aa · 30.3% of protein
Raw token
HATPase_c:243:1.31e-23:349:108:109- Raw architecture: HAMP:50:0.0000000000145:119:70:69#HisKA:130:0.000000000000438:191:62:64#HATPase_c:243:1.31e-23:349:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016483475::NZ_JAEHBV010000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span170888-172637Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJDS87_00865RefSeq proteinWP_199671740.1
Context group ID
GCF_016483475::NZ_JAEHBV010000001.1::G00003Context members
JDS87_RS00860JDS87_RS00865
Partner locus tags
JDS87_RS00860JDS87_RS00865
Partner old locus tags
JDS87_00865JDS87_00870
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_199671740.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJDS87_RS00860Primary locus identifier stored in the genes table.
Old locus tagJDS87_00865Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEHBV010000001.1Sequence record reported by the local genomic context database.
Genomic interval170 888-171 949 nt1 062 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span170 888-172 637 ntGCF_016483475::NZ_JAEHBV010000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016483475::NZ_JAEHBV010000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEHBV010000001.1All displayed genes belong to this local TCS context.
Neighborhood span170 888-172 637 nt1 750 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
170 888 nt172 637 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JDS87_RS00860GCF_016483475#JDS87_RS00860
HKClassicCurrent focus
170 888-171 949 nt · Reverse (-)
JDS87_RS00865GCF_016483475#JDS87_RS00865
RROmpR
171 939-172 637 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016483475#JDS87_RS00860The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2786165
Simplified PFAM architecture for HKOC_2786165
PFAM domain coverage: 223 / 353 aa (63.2%)
1 aa353 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[67-119] | HisKA[130-191] | HATPase_c[243-350]
- Domain count: 3
- Matched identifier: HKOC_2786165
- Positioned domains: HAMP 67-119 ; HisKA 130-191 ; HATPase_c 243-350
Cluster members and taxonomy
Representative gene: GCF_016483475#JDS87_RS00860
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_016483475
AssemblyASM1648347v1 · Contighaploid
Genome composition6 258 662 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 107 · HK 60 · RR 46CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key