Gene detail

JDS87_RS05325

Histidine kinase, Classic

Bacillus cereus · GCF_016483475

Open genome Open selected cluster RefSeq

ClassHKTypeClassicLength498 aaTM0ValidatedNoCompleteYesContextorphan

Gene IDGCF_016483475#JDS87_RS05325Stable P2CS identifier used across views.

GenomeGCF_016483475Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus

Selected clusterHKOC_1489480Run 6 · 1 sequences · id 100% · cov 80% · representative

External referencesWP_199672486.1 · MIST4 JDS87_RS05325RefSeq · MIST4

Domain signature

Compact overview inferred from the domain field

HisKAHATPase_c

Protein length498 aaLength used to scale native and Biotite-like views.

Annotated domains22 with usable coordinates.

Domain coverage167 / 498 aa (33.5%)Merged over positioned domains only.

Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa498 aa

Domain-by-domain annotation2 items

1 HisKA#1

286-348 aa · 63 aa · 12.7% of protein

Raw tokenHisKA:286:0.0000000000000145:348:63:64

2 HATPase_c#2

394-497 aa · 104 aa · 20.9% of protein

Raw tokenHATPase_c:394:3.56e-30:497:107:109

Raw architecture: HisKA:286:0.0000000000000145:348:63:64#HATPase_c:394:3.56e-30:497:107:109
Domain description: 1 HisKA,1 HATPase_c
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelorphanGCF_016483475::NZ_JAEHBV010000005.1::G00052

Group size11 locus tag listed below.

HK / RR1 / 0Counts resolved for the local TCS neighborhood.

Context span62832-64328Genomic interval covered by the local TCS group.

Identifiers

Old locus tagJDS87_05345RefSeq proteinWP_199672486.1

Context group IDGCF_016483475::NZ_JAEHBV010000005.1::G00052

Context members

JDS87_RS05325

Partner locus tags

JDS87_RS05325

Partner old locus tags

JDS87_05345

Partner protein IDs

WP_199672486.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

No UniProt / GO / PubMed mapping was found for WP_199672486.1.

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagJDS87_RS05325Primary locus identifier stored in the genes table.

Old locus tagJDS87_05345Legacy locus tag recovered from the local context mapping.

Contig / repliconNZ_JAEHBV010000005.1Sequence record reported by the local genomic context database.

Genomic interval62 832-64 328 nt1 497 nt · Reverse (-)

StrandReverse (-)Strand sign follows the local context database convention.

Local TCS group span62 832-64 328 ntGCF_016483475::NZ_JAEHBV010000005.1::G00052

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_016483475::NZ_JAEHBV010000005.1::G00052

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelorphanNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_JAEHBV010000005.1All displayed genes belong to this local TCS context.

Neighborhood span62 832-64 328 nt1 497 nt

Members11 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

62 832 nt64 328 nt

+-JDS87_RS05325

Neighborhood gene cards

1 gene in the current local neighborhood.

JDS87_RS05325GCF_016483475#JDS87_RS05325

HKClassicCurrent focus

62 832-64 328 nt · Reverse (-)

Old locus JDS87_05345RefSeq WP_199672486.1

Open current gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_1489480HK

Run 61 sequencesid 100%cov 80%

PFAM DUF3149 + dCache_1 + HisKA + HATPase_c

Current gene is the representative sequence.

Selected clusterHKOC_1489480Run 6 · HK · 1 sequences

Representative sequenceGCF_016483475#JDS87_RS05325The current gene is the representative for this cluster.

PFAM architectureDUF3149 + dCache_1 + HisKA + HATPase_c4 domains in the representative PFAM annotation.

Open in cluster search

PFAM architecture for HKOC_1489480

Simplified PFAM architecture for HKOC_1489480

PFAM domain coverage: 358 / 498 aa (71.9%)

1 aa498 aa

DUF3149dCache_1HisKAHATPase_c

Simplified architecture: DUF3149 + dCache_1 + HisKA + HATPase_c
Raw architecture: DUF3149[12-38] | dCache_1[41-206] | HisKA[286-346] | HATPase_c[393-496]
Domain count: 4
Matched identifier: HKOC_1489480
Positioned domains: DUF3149 12-38 ; dCache_1 41-206 ; HisKA 286-346 ; HATPase_c 393-496

Cluster members and taxonomy

Representative gene: GCF_016483475#JDS87_RS05325

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 1 396 · GCF_016483475

AssemblyASM1648347v1 · Contighaploid

Genome composition6 258 662 bp · 35,0% GCBacillus cereus

Signal transduction countsGenes 107 · HK 60 · RR 46CheA 0 · PP 1

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus

Lineage path7 lineage nodes

1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus

Open genome Search genes in genome Search HK genes NCBI assembly files

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