1 sCache_like#1
35-149 aa · 115 aa · 19.6% of protein
Raw token
sCache_like:35:3.57e-26:149:117:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JDS87_RS02260
Histidine kinase, Classic
Bacillus cereus · GCF_016483475
ClassHKTypeClassicLength587 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016483475#JDS87_RS02260Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
sCache_likeHAMPPASHisKAHATPase_c
Protein length587 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage470 / 587 aa (80.1%)Merged over positioned domains only.
Domain description1 sCache_like,1 HAMP,1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa587 aa
Domain-by-domain annotation5 items
2 HAMP#2
165-234 aa · 70 aa · 11.9% of protein
Raw token
HAMP:165:0.000000000011:234:70:693 PAS#3
245-351 aa · 107 aa · 18.2% of protein
Raw token
PAS:245:0.0000000000000107:351:112:1134 HisKA#4
360-427 aa · 68 aa · 11.6% of protein
Raw token
HisKA:360:2.12e-21:427:68:645 HATPase_c#5
472-581 aa · 110 aa · 18.7% of protein
Raw token
HATPase_c:472:5.71e-36:581:110:109- Raw architecture: sCache_like:35:3.57e-26:149:117:114#HAMP:165:0.000000000011:234:70:69#PAS:245:0.0000000000000107:351:112:113#HisKA:360:2.12e-21:427:68:64#HATPase_c:472:5.71e-36:581:110:109
- Domain description: 1 sCache_like,1 HAMP,1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016483475::NZ_JAEHBV010000002.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span136949-139424Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJDS87_02275RefSeq proteinWP_199672019.1
Context group ID
GCF_016483475::NZ_JAEHBV010000002.1::G00022Context members
JDS87_RS02255JDS87_RS02260
Partner locus tags
JDS87_RS02255JDS87_RS02260
Partner old locus tags
JDS87_02270JDS87_02275
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_199672019.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJDS87_RS02260Primary locus identifier stored in the genes table.
Old locus tagJDS87_02275Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEHBV010000002.1Sequence record reported by the local genomic context database.
Genomic interval137 661-139 424 nt1 764 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span136 949-139 424 ntGCF_016483475::NZ_JAEHBV010000002.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016483475::NZ_JAEHBV010000002.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEHBV010000002.1All displayed genes belong to this local TCS context.
Neighborhood span136 949-139 424 nt2 476 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
136 949 nt139 424 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JDS87_RS02255GCF_016483475#JDS87_RS02255
RROmpR
136 949-137 668 nt · Forward (+)
JDS87_RS02260GCF_016483475#JDS87_RS02260
HKClassicCurrent focus
137 661-139 424 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016483475#JDS87_RS02260The current gene is the representative for this cluster.
PFAM architecturesCache_like + HAMP + PAS + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1128201
Simplified PFAM architecture for HKOC_1128201
PFAM domain coverage: 449 / 587 aa (76.5%)
1 aa587 aa
sCache_likeHAMPPASHisKAHATPase_c
- Simplified architecture: sCache_like + HAMP + PAS + HisKA + HATPase_c
- Raw architecture: sCache_like[33-149] | HAMP[188-234] | PAS[245-351] | HisKA[360-426] | HATPase_c[472-582]
- Domain count: 5
- Matched identifier: HKOC_1128201
- Positioned domains: sCache_like 33-149 ; HAMP 188-234 ; PAS 245-351 ; HisKA 360-426 ; HATPase_c 472-582
Cluster members and taxonomy
Representative gene: GCF_016483475#JDS87_RS02260
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_016483475
AssemblyASM1648347v1 · Contighaploid
Genome composition6 258 662 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 107 · HK 60 · RR 46CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key