1 Response_reg#1
20-132 aa · 113 aa · 43.6% of protein
Raw token
Response_reg:20:0.0000000000000013:132:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4V76_RS01830
Response regulator LytTR family
Blautia wexlerae · GCF_015667495
ClassRRTypeLytTRLength259 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015667495#I4V76_RS01830Stable P2CS identifier used across views.
GenomeGCF_015667495Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length259 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage206 / 259 aa (79.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa259 aa
Domain-by-domain annotation2 items
2 LytTR#2
156-248 aa · 93 aa · 35.9% of protein
Raw token
LytTR:156:5.94e-19:248:98:98- Raw architecture: Response_reg:20:0.0000000000000013:132:113:111#LytTR:156:5.94e-19:248:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015667495::NZ_JADPEC010000003.1::G00042
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span11176-11955Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015667495::NZ_JADPEC010000003.1::G00042Context members
I4V76_RS01830
Partner locus tags
I4V76_RS01830
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_025580467.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4V76_RS01830Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPEC010000003.1Sequence record reported by the local genomic context database.
Genomic interval11 176-11 955 nt780 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span11 176-11 955 ntGCF_015667495::NZ_JADPEC010000003.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015667495::NZ_JADPEC010000003.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPEC010000003.1All displayed genes belong to this local TCS context.
Neighborhood span11 176-11 955 nt780 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 176 nt11 955 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I4V76_RS01830GCF_015667495#I4V76_RS01830
RRLytTRCurrent focus
11 176-11 955 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015552855#I2D79_RS17040Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0583022
Simplified PFAM architecture for RROC_0583022
PFAM domain coverage: 206 / 294 aa (70.1%)
1 aa294 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[55-170] | LytTR[193-282]
- Domain count: 2
- Matched identifier: RROC_0583022
- Positioned domains: Response_reg 55-170 ; LytTR 193-282
Cluster members and taxonomy
Representative gene: GCF_015552855#I2D79_RS17040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_015667495
AssemblyASM1566749v1 · Scaffoldhaploid
Genome composition4 143 050 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 129 · HK 64 · RR 64CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key