1 HisKA#1
189-253 aa · 65 aa · 16.5% of protein
Raw token
HisKA:189:0.00000000000000776:253:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4V76_RS00640
Histidine kinase, Classic
Blautia wexlerae · GCF_015667495
ClassHKTypeClassicLength394 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015667495#I4V76_RS00640Stable P2CS identifier used across views.
GenomeGCF_015667495Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length394 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 394 aa (39.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa394 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
297-385 aa · 89 aa · 22.6% of protein
Raw token
HATPase_c:297:1.29e-18:385:97:109- Raw architecture: HisKA:189:0.00000000000000776:253:65:64#HATPase_c:297:1.29e-18:385:97:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015667495::NZ_JADPEC010000001.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span137416-139258Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015667495::NZ_JADPEC010000001.1::G00024Context members
I4V76_RS00640I4V76_RS00645
Partner locus tags
I4V76_RS00640I4V76_RS00645
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_082419246.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4V76_RS00640Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPEC010000001.1Sequence record reported by the local genomic context database.
Genomic interval137 416-138 600 nt1 185 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span137 416-139 258 ntGCF_015667495::NZ_JADPEC010000001.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015667495::NZ_JADPEC010000001.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPEC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span137 416-139 258 nt1 843 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
137 416 nt139 258 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I4V76_RS00640GCF_015667495#I4V76_RS00640
HKClassicCurrent focus
137 416-138 600 nt · Reverse (-)
I4V76_RS00645GCF_015667495#I4V76_RS00645
RROmpR
138 605-139 258 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015667495#I4V76_RS00640The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2497891
Simplified PFAM architecture for HKOC_2497891
PFAM domain coverage: 150 / 394 aa (38.1%)
1 aa394 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[190-253] | HATPase_c[297-382]
- Domain count: 2
- Matched identifier: HKOC_2497891
- Positioned domains: HisKA 190-253 ; HATPase_c 297-382
Cluster members and taxonomy
Representative gene: GCF_015667495#I4V76_RS00640
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_015667495
AssemblyASM1566749v1 · Scaffoldhaploid
Genome composition4 143 050 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 129 · HK 64 · RR 64CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key