1 dCache_1#1
77-274 aa · 198 aa · 33.3% of protein
Raw token
dCache_1:77:0.0000000176:274:201:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4V76_RS00065
Histidine kinase, Classic
Blautia wexlerae · GCF_015667495
ClassHKTypeClassicLength595 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015667495#I4V76_RS00065Stable P2CS identifier used across views.
GenomeGCF_015667495Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1His_kinaseHATPase_c
Protein length595 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage382 / 595 aa (64.2%)Merged over positioned domains only.
Domain description1 dCache_1,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa595 aa
Domain-by-domain annotation3 items
2 His_kinase#2
382-457 aa · 76 aa · 12.8% of protein
Raw token
His_kinase:382:1.61e-25:457:77:803 HATPase_c#3
476-583 aa · 108 aa · 18.2% of protein
Raw token
HATPase_c:476:0.000000106:583:109:109- Raw architecture: dCache_1:77:0.0000000176:274:201:195#His_kinase:382:1.61e-25:457:77:80#HATPase_c:476:0.000000106:583:109:109
- Domain description: 1 dCache_1,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015667495::NZ_JADPEC010000001.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span10995-14335Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015667495::NZ_JADPEC010000001.1::G00019Context members
I4V76_RS00060I4V76_RS00065
Partner locus tags
I4V76_RS00060I4V76_RS00065
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_196027365.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4V76_RS00065Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPEC010000001.1Sequence record reported by the local genomic context database.
Genomic interval12 548-14 335 nt1 788 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span10 995-14 335 ntGCF_015667495::NZ_JADPEC010000001.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015667495::NZ_JADPEC010000001.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPEC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span10 995-14 335 nt3 341 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 995 nt14 335 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I4V76_RS00060GCF_015667495#I4V76_RS00060
RRunclassified
10 995-12 551 nt · Reverse (-)
I4V76_RS00065GCF_015667495#I4V76_RS00065
HKClassicCurrent focus
12 548-14 335 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015667495#I4V76_RS00065The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1083241
Simplified PFAM architecture for HKOC_1083241
PFAM domain coverage: 186 / 595 aa (31.3%)
1 aa595 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[380-455] | HATPase_c[474-583]
- Domain count: 2
- Matched identifier: HKOC_1083241
- Positioned domains: His_kinase 380-455 ; HATPase_c 474-583
Cluster members and taxonomy
Representative gene: GCF_015667495#I4V76_RS00065
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_015667495
AssemblyASM1566749v1 · Scaffoldhaploid
Genome composition4 143 050 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 129 · HK 64 · RR 64CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key