1 Response_reg#1
55-167 aa · 113 aa · 38.4% of protein
Raw token
Response_reg:55:7.91e-16:167:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2D79_RS17040
Response regulator LytTR family
Blautia wexlerae · GCF_015552855
ClassRRTypeLytTRLength294 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015552855#I2D79_RS17040Stable P2CS identifier used across views.
GenomeGCF_015552855Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length294 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage206 / 294 aa (70.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa294 aa
Domain-by-domain annotation2 items
2 LytTR#2
191-283 aa · 93 aa · 31.6% of protein
Raw token
LytTR:191:7.69e-19:283:98:98- Raw architecture: Response_reg:55:7.91e-16:167:113:111#LytTR:191:7.69e-19:283:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015552855::NZ_JADNFN010000063.1::G00057
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-886Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015552855::NZ_JADNFN010000063.1::G00057Context members
I2D79_RS17040
Partner locus tags
I2D79_RS17040
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_207740365.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2D79_RS17040Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNFN010000063.1Sequence record reported by the local genomic context database.
Genomic interval1-886 nt886 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-886 ntGCF_015552855::NZ_JADNFN010000063.1::G00057
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015552855::NZ_JADNFN010000063.1::G00057Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNFN010000063.1All displayed genes belong to this local TCS context.
Neighborhood span1-886 nt886 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt886 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2D79_RS17040GCF_015552855#I2D79_RS17040
RRLytTRCurrent focus
1-886 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015552855#I2D79_RS17040The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0583022
Simplified PFAM architecture for RROC_0583022
PFAM domain coverage: 206 / 294 aa (70.1%)
1 aa294 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[55-170] | LytTR[193-282]
- Domain count: 2
- Matched identifier: RROC_0583022
- Positioned domains: Response_reg 55-170 ; LytTR 193-282
Cluster members and taxonomy
Representative gene: GCF_015552855#I2D79_RS17040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_015552855
AssemblyASM1555285v1 · Scaffoldhaploid
Genome composition3 884 995 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 116 · HK 54 · RR 58CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key