1 Response_reg#1
8-120 aa · 113 aa · 20.7% of protein
Raw token
Response_reg:8:2.62e-26:120:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4V76_RS00880
Response regulator, unclassified
Blautia wexlerae · GCF_015667495
ClassRRTypeunclassifiedLength547 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015667495#I4V76_RS00880Stable P2CS identifier used across views.
GenomeGCF_015667495Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length547 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage193 / 547 aa (35.3%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa547 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
451-492 aa · 42 aa · 7.7% of protein
Raw token
HTH_AraC:451:0.000000000411:492:42:423 HTH_AraC#3
505-542 aa · 38 aa · 6.9% of protein
Raw token
HTH_AraC:505:0.0000000228:542:38:42- Raw architecture: Response_reg:8:2.62e-26:120:114:111#HTH_AraC:451:0.000000000411:492:42:42#HTH_AraC:505:0.0000000228:542:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015667495::NZ_JADPEC010000001.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span191540-195161Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015667495::NZ_JADPEC010000001.1::G00025Context members
I4V76_RS00880I4V76_RS00885
Partner locus tags
I4V76_RS00880I4V76_RS00885
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173721383.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4V76_RS00880Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPEC010000001.1Sequence record reported by the local genomic context database.
Genomic interval191 540-193 183 nt1 644 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span191 540-195 161 ntGCF_015667495::NZ_JADPEC010000001.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015667495::NZ_JADPEC010000001.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPEC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span191 540-195 161 nt3 622 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
191 540 nt195 161 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I4V76_RS00880GCF_015667495#I4V76_RS00880
RRunclassifiedCurrent focus
191 540-193 183 nt · Reverse (-)
I4V76_RS00885GCF_015667495#I4V76_RS00885
HKClassic
193 356-195 161 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302125#G5A00_RS05645Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_AraC + HTH_AraC3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0078574
Simplified PFAM architecture for RROC_0078574
PFAM domain coverage: 195 / 547 aa (35.6%)
1 aa547 aa
Response_regHTH_AraCHTH_AraC
- Simplified architecture: Response_reg + HTH_AraC + HTH_AraC
- Raw architecture: Response_reg[8-120] | HTH_AraC[451-492] | HTH_AraC[503-542]
- Domain count: 3
- Matched identifier: RROC_0078574
- Positioned domains: Response_reg 8-120 ; HTH_AraC 451-492 ; HTH_AraC 503-542
Cluster members and taxonomy
Representative gene: GCF_013302125#G5A00_RS05645
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_015667495
AssemblyASM1566749v1 · Scaffoldhaploid
Genome composition4 143 050 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 129 · HK 64 · RR 64CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key