1 HisKA#1
349-415 aa · 67 aa · 9.0% of protein
Raw token
HisKA:349:2.39e-17:415:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4V76_RS00605
Histidine kinase, Hybrid
Blautia wexlerae · GCF_015667495
ClassHKTypeHybridLength745 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015667495#I4V76_RS00605Stable P2CS identifier used across views.
GenomeGCF_015667495Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length745 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage303 / 745 aa (40.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa745 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
462-580 aa · 119 aa · 16.0% of protein
Raw token
HATPase_c:462:1.19e-29:580:120:1093 Response_reg#3
608-724 aa · 117 aa · 15.7% of protein
Raw token
Response_reg:608:1.07e-28:724:117:111- Raw architecture: HisKA:349:2.39e-17:415:67:64#HATPase_c:462:1.19e-29:580:120:109#Response_reg:608:1.07e-28:724:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015667495::NZ_JADPEC010000001.1::G00023
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span128587-130824Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015667495::NZ_JADPEC010000001.1::G00023Context members
I4V76_RS00605
Partner locus tags
I4V76_RS00605
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243282953.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4V76_RS00605Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPEC010000001.1Sequence record reported by the local genomic context database.
Genomic interval128 587-130 824 nt2 238 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span128 587-130 824 ntGCF_015667495::NZ_JADPEC010000001.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015667495::NZ_JADPEC010000001.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPEC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span128 587-130 824 nt2 238 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
128 587 nt130 824 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I4V76_RS00605GCF_015667495#I4V76_RS00605
HKHybridCurrent focus
128 587-130 824 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015667495#I4V76_RS00605The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0680686
Simplified PFAM architecture for HKOC_0680686
PFAM domain coverage: 300 / 745 aa (40.3%)
1 aa745 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[350-415] | HATPase_c[462-579] | Response_reg[608-723]
- Domain count: 3
- Matched identifier: HKOC_0680686
- Positioned domains: HisKA 350-415 ; HATPase_c 462-579 ; Response_reg 608-723
Cluster members and taxonomy
Representative gene: GCF_015667495#I4V76_RS00605
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_015667495
AssemblyASM1566749v1 · Scaffoldhaploid
Genome composition4 143 050 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 129 · HK 64 · RR 64CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key