1 GAF_3#1
178-298 aa · 121 aa · 22.2% of protein
Raw token
GAF_3:178:0.0000982:298:127:129P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2D69_RS08210
Histidine kinase, Classic
Ruminococcus sp. D54t1_190329_F1 · GCF_015551645
ClassHKTypeClassicLength545 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015551645#I2D69_RS08210Stable P2CS identifier used across views.
GenomeGCF_015551645Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
GAF_3HisKAHATPase_c
Protein length545 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage302 / 545 aa (55.4%)Merged over positioned domains only.
Domain description1 GAF_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa545 aa
Domain-by-domain annotation3 items
2 HisKA#2
318-385 aa · 68 aa · 12.5% of protein
Raw token
HisKA:318:0.00000000000784:385:68:643 HATPase_c#3
428-540 aa · 113 aa · 20.7% of protein
Raw token
HATPase_c:428:6.02e-32:540:113:109- Raw architecture: GAF_3:178:0.0000982:298:127:129#HisKA:318:0.00000000000784:385:68:64#HATPase_c:428:6.02e-32:540:113:109
- Domain description: 1 GAF_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015551645::NZ_JADNDC010000014.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span40528-42877Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015551645::NZ_JADNDC010000014.1::G00011Context members
I2D69_RS08205I2D69_RS08210
Partner locus tags
I2D69_RS08205I2D69_RS08210
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226815022.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2D69_RS08210Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNDC010000014.1Sequence record reported by the local genomic context database.
Genomic interval41 240-42 877 nt1 638 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span40 528-42 877 ntGCF_015551645::NZ_JADNDC010000014.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015551645::NZ_JADNDC010000014.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNDC010000014.1All displayed genes belong to this local TCS context.
Neighborhood span40 528-42 877 nt2 350 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
40 528 nt42 877 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2D69_RS08205GCF_015551645#I2D69_RS08205
RROmpR
40 528-41 247 nt · Reverse (-)
I2D69_RS08210GCF_015551645#I2D69_RS08210
HKClassicCurrent focus
41 240-42 877 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302375#G5A01_RS09430Use this link to inspect the representative gene detail.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1307366
Simplified PFAM architecture for HKOC_1307366
PFAM domain coverage: 286 / 545 aa (52.5%)
1 aa545 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[48-154] | HisKA[318-385] | HATPase_c[429-539]
- Domain count: 3
- Matched identifier: HKOC_1307366
- Positioned domains: DUF4118 48-154 ; HisKA 318-385 ; HATPase_c 429-539
Cluster members and taxonomy
Representative gene: GCF_013302375#G5A01_RS09430
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 114 · GCF_015551645
AssemblyASM1555164v1 · Scaffoldhaploid
Genome composition4 332 946 bp · 43,0% GCRuminococcus sp. D54t1_190329_F1
Signal transduction countsGenes 138 · HK 68 · RR 69CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key