1 HisKA#1
87-148 aa · 62 aa · 20.7% of protein
Raw token
HisKA:87:0.0000000000361:148:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2D69_RS05165
Histidine kinase, Classic
Ruminococcus sp. D54t1_190329_F1 · GCF_015551645
ClassHKTypeClassicLength299 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015551645#I2D69_RS05165Stable P2CS identifier used across views.
GenomeGCF_015551645Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length299 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 299 aa (54.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa299 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
199-298 aa · 100 aa · 33.4% of protein
Raw token
HATPase_c:199:1.83e-31:298:100:109- Raw architecture: HisKA:87:0.0000000000361:148:62:64#HATPase_c:199:1.83e-31:298:100:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015551645::NZ_JADNDC010000008.1::G00080
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span46678-48247Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015551645::NZ_JADNDC010000008.1::G00080Context members
I2D69_RS05165I2D69_RS05170
Partner locus tags
I2D69_RS05165I2D69_RS05170
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195379515.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2D69_RS05165Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNDC010000008.1Sequence record reported by the local genomic context database.
Genomic interval46 678-47 577 nt900 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span46 678-48 247 ntGCF_015551645::NZ_JADNDC010000008.1::G00080
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015551645::NZ_JADNDC010000008.1::G00080Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNDC010000008.1All displayed genes belong to this local TCS context.
Neighborhood span46 678-48 247 nt1 570 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 678 nt48 247 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2D69_RS05165GCF_015551645#I2D69_RS05165
HKClassicCurrent focus
46 678-47 577 nt · Reverse (-)
I2D69_RS05170GCF_015551645#I2D69_RS05170
RROmpR
47 570-48 247 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015551645#I2D69_RS05165The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2888003
Simplified PFAM architecture for HKOC_2888003
PFAM domain coverage: 164 / 299 aa (54.8%)
1 aa299 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[86-148] | HATPase_c[198-298]
- Domain count: 2
- Matched identifier: HKOC_2888003
- Positioned domains: HisKA 86-148 ; HATPase_c 198-298
Cluster members and taxonomy
Representative gene: GCF_015551645#I2D69_RS05165
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 114 · GCF_015551645
AssemblyASM1555164v1 · Scaffoldhaploid
Genome composition4 332 946 bp · 43,0% GCRuminococcus sp. D54t1_190329_F1
Signal transduction countsGenes 138 · HK 68 · RR 69CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key