1 HAMP#1
190-258 aa · 69 aa · 13.7% of protein
Raw token
HAMP:190:0.00000000000221:258:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2D69_RS04370
Histidine kinase, Classic
Ruminococcus sp. D54t1_190329_F1 · GCF_015551645
ClassHKTypeClassicLength505 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015551645#I2D69_RS04370Stable P2CS identifier used across views.
GenomeGCF_015551645Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length505 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 505 aa (49.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa505 aa
Domain-by-domain annotation3 items
2 HisKA#2
283-350 aa · 68 aa · 13.5% of protein
Raw token
HisKA:283:0.0000000000000124:350:68:643 HATPase_c#3
395-505 aa · 111 aa · 22.0% of protein
Raw token
HATPase_c:395:7.62e-19:505:112:109- Raw architecture: HAMP:190:0.00000000000221:258:69:69#HisKA:283:0.0000000000000124:350:68:64#HATPase_c:395:7.62e-19:505:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015551645::NZ_JADNDC010000007.1::G00078
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span226-2420Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015551645::NZ_JADNDC010000007.1::G00078Context members
I2D69_RS04365I2D69_RS04370
Partner locus tags
I2D69_RS04365I2D69_RS04370
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173770362.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX2HBC5Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX2HBC5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2D69_RS04370Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNDC010000007.1Sequence record reported by the local genomic context database.
Genomic interval903-2 420 nt1 518 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span226-2 420 ntGCF_015551645::NZ_JADNDC010000007.1::G00078
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015551645::NZ_JADNDC010000007.1::G00078Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNDC010000007.1All displayed genes belong to this local TCS context.
Neighborhood span226-2 420 nt2 195 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
226 nt2 420 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2D69_RS04365GCF_015551645#I2D69_RS04365
RROmpR
226-903 nt · Forward (+)
I2D69_RS04370GCF_015551645#I2D69_RS04370
HKClassicCurrent focus
903-2 420 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302345#G5B17_RS19310Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1450845
Simplified PFAM architecture for HKOC_1450845
PFAM domain coverage: 228 / 505 aa (45.1%)
1 aa505 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[207-257] | HisKA[283-350] | HATPase_c[396-504]
- Domain count: 3
- Matched identifier: HKOC_1450845
- Positioned domains: HAMP 207-257 ; HisKA 283-350 ; HATPase_c 396-504
Cluster members and taxonomy
Representative gene: GCF_013302345#G5B17_RS19310
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 114 · GCF_015551645
AssemblyASM1555164v1 · Scaffoldhaploid
Genome composition4 332 946 bp · 43,0% GCRuminococcus sp. D54t1_190329_F1
Signal transduction countsGenes 138 · HK 68 · RR 69CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key