1 HAMP#1
188-254 aa · 67 aa · 12.7% of protein
Raw token
HAMP:188:0.0000000000000173:254:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2D69_RS02460
Histidine kinase, Classic
Ruminococcus sp. D54t1_190329_F1 · GCF_015551645
ClassHKTypeClassicLength528 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015551645#I2D69_RS02460Stable P2CS identifier used across views.
GenomeGCF_015551645Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length528 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 528 aa (47.3%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa528 aa
Domain-by-domain annotation3 items
2 His_kinase#2
270-349 aa · 80 aa · 15.2% of protein
Raw token
His_kinase:270:1.01e-31:349:80:803 HATPase_c#3
369-471 aa · 103 aa · 19.5% of protein
Raw token
HATPase_c:369:0.0000000000000038:471:105:109- Raw architecture: HAMP:188:0.0000000000000173:254:67:69#His_kinase:270:1.01e-31:349:80:80#HATPase_c:369:0.0000000000000038:471:105:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015551645::NZ_JADNDC010000004.1::G00056
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span30605-34325Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015551645::NZ_JADNDC010000004.1::G00056Context members
I2D69_RS02460I2D69_RS02465
Partner locus tags
I2D69_RS02460I2D69_RS02465
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_148461381.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2D69_RS02460Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNDC010000004.1Sequence record reported by the local genomic context database.
Genomic interval30 605-32 191 nt1 587 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span30 605-34 325 ntGCF_015551645::NZ_JADNDC010000004.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015551645::NZ_JADNDC010000004.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNDC010000004.1All displayed genes belong to this local TCS context.
Neighborhood span30 605-34 325 nt3 721 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 605 nt34 325 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2D69_RS02460GCF_015551645#I2D69_RS02460
HKClassicCurrent focus
30 605-32 191 nt · Reverse (-)
I2D69_RS02465GCF_015551645#I2D69_RS02465
RRRpfG
32 313-34 325 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015551645#I2D69_RS02460The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1364645
Simplified PFAM architecture for HKOC_1364645
PFAM domain coverage: 232 / 528 aa (43.9%)
1 aa528 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[206-254] | His_kinase[270-347] | HATPase_c[368-472]
- Domain count: 3
- Matched identifier: HKOC_1364645
- Positioned domains: HAMP 206-254 ; His_kinase 270-347 ; HATPase_c 368-472
Cluster members and taxonomy
Representative gene: GCF_015551645#I2D69_RS02460
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 114 · GCF_015551645
AssemblyASM1555164v1 · Scaffoldhaploid
Genome composition4 332 946 bp · 43,0% GCRuminococcus sp. D54t1_190329_F1
Signal transduction countsGenes 138 · HK 68 · RR 69CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key