1 HAMP#1
308-373 aa · 66 aa · 10.9% of protein
Raw token
HAMP:308:0.00000353:373:66:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2D69_RS01625
Histidine kinase, Classic
Ruminococcus sp. D54t1_190329_F1 · GCF_015551645
ClassHKTypeClassicLength607 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015551645#I2D69_RS01625Stable P2CS identifier used across views.
GenomeGCF_015551645Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length607 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage258 / 607 aa (42.5%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa607 aa
Domain-by-domain annotation3 items
2 His_kinase#2
394-472 aa · 79 aa · 13.0% of protein
Raw token
His_kinase:394:4.84e-28:472:79:803 HATPase_c#3
492-604 aa · 113 aa · 18.6% of protein
Raw token
HATPase_c:492:0.0000645:604:117:109- Raw architecture: HAMP:308:0.00000353:373:66:69#His_kinase:394:4.84e-28:472:79:80#HATPase_c:492:0.0000645:604:117:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015551645::NZ_JADNDC010000002.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span163943-166995Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015551645::NZ_JADNDC010000002.1::G00040Context members
I2D69_RS01620I2D69_RS01625
Partner locus tags
I2D69_RS01620I2D69_RS01625
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_148461307.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2D69_RS01625Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNDC010000002.1Sequence record reported by the local genomic context database.
Genomic interval165 172-166 995 nt1 824 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span163 943-166 995 ntGCF_015551645::NZ_JADNDC010000002.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015551645::NZ_JADNDC010000002.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNDC010000002.1All displayed genes belong to this local TCS context.
Neighborhood span163 943-166 995 nt3 053 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
163 943 nt166 995 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2D69_RS01620GCF_015551645#I2D69_RS01620
RRunclassified
163 943-165 175 nt · Forward (+)
I2D69_RS01625GCF_015551645#I2D69_RS01625
HKClassicCurrent focus
165 172-166 995 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015551645#I2D69_RS01625The current gene is the representative for this cluster.
PFAM architectureHis_kinase1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1020651
Simplified PFAM architecture for HKOC_1020651
PFAM domain coverage: 79 / 607 aa (13.0%)
1 aa607 aa
His_kinase
- Simplified architecture: His_kinase
- Raw architecture: His_kinase[394-472]
- Domain count: 1
- Matched identifier: HKOC_1020651
- Positioned domains: His_kinase 394-472
Cluster members and taxonomy
Representative gene: GCF_015551645#I2D69_RS01625
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 114 · GCF_015551645
AssemblyASM1555164v1 · Scaffoldhaploid
Genome composition4 332 946 bp · 43,0% GCRuminococcus sp. D54t1_190329_F1
Signal transduction countsGenes 138 · HK 68 · RR 69CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key