1 HAMP#1
92-160 aa · 69 aa · 17.8% of protein
Raw token
HAMP:92:0.0000000000000347:160:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2C60_RS06750
Histidine kinase, Classic
Blautia wexlerae · GCF_015550855
ClassHKTypeClassicLength387 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015550855#I2C60_RS06750Stable P2CS identifier used across views.
GenomeGCF_015550855Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length387 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 387 aa (62.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa387 aa
Domain-by-domain annotation3 items
2 HisKA#2
166-228 aa · 63 aa · 16.3% of protein
Raw token
HisKA:166:0.000000000203:228:63:643 HATPase_c#3
274-383 aa · 110 aa · 28.4% of protein
Raw token
HATPase_c:274:9.91e-32:383:111:109- Raw architecture: HAMP:92:0.0000000000000347:160:69:69#HisKA:166:0.000000000203:228:63:64#HATPase_c:274:9.91e-32:383:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015550855::NZ_JADNBQ010000068.1::G00062
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12755-14668Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015550855::NZ_JADNBQ010000068.1::G00062Context members
I2C60_RS06750I2C60_RS06755
Partner locus tags
I2C60_RS06750I2C60_RS06755
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195303292.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2C60_RS06750Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNBQ010000068.1Sequence record reported by the local genomic context database.
Genomic interval12 755-13 918 nt1 164 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span12 755-14 668 ntGCF_015550855::NZ_JADNBQ010000068.1::G00062
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015550855::NZ_JADNBQ010000068.1::G00062Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNBQ010000068.1All displayed genes belong to this local TCS context.
Neighborhood span12 755-14 668 nt1 914 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 755 nt14 668 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2C60_RS06750GCF_015550855#I2C60_RS06750
HKClassicCurrent focus
12 755-13 918 nt · Reverse (-)
I2C60_RS06755GCF_015550855#I2C60_RS06755
RROmpR
14 000-14 668 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015550855#I2C60_RS06750The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2552609
Simplified PFAM architecture for HKOC_2552609
PFAM domain coverage: 222 / 387 aa (57.4%)
1 aa387 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[109-160] | HisKA[166-228] | HATPase_c[277-383]
- Domain count: 3
- Matched identifier: HKOC_2552609
- Positioned domains: HAMP 109-160 ; HisKA 166-228 ; HATPase_c 277-383
Cluster members and taxonomy
Representative gene: GCF_015550855#I2C60_RS06750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_015550855
AssemblyASM1555085v1 · Scaffoldhaploid
Genome composition3 919 843 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 124 · HK 62 · RR 59CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key