1 Response_reg#1
4-119 aa · 116 aa · 48.9% of protein
Raw token
Response_reg:4:5.68e-16:119:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2C60_RS01180
Response regulator LytTR family
Blautia wexlerae · GCF_015550855
ClassRRTypeLytTRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015550855#I2C60_RS01180Stable P2CS identifier used across views.
GenomeGCF_015550855Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage210 / 237 aa (88.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-230 aa · 94 aa · 39.7% of protein
Raw token
LytTR:137:2.61e-18:230:99:98- Raw architecture: Response_reg:4:5.68e-16:119:118:111#LytTR:137:2.61e-18:230:99:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015550855::NZ_JADNBQ010000007.1::G00069
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span13709-14422Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015550855::NZ_JADNBQ010000007.1::G00069Context members
I2C60_RS01180
Partner locus tags
I2C60_RS01180
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025578625.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4PH24Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4PH24_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2C60_RS01180Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNBQ010000007.1Sequence record reported by the local genomic context database.
Genomic interval13 709-14 422 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span13 709-14 422 ntGCF_015550855::NZ_JADNBQ010000007.1::G00069
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015550855::NZ_JADNBQ010000007.1::G00069Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNBQ010000007.1All displayed genes belong to this local TCS context.
Neighborhood span13 709-14 422 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 709 nt14 422 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2C60_RS01180GCF_015550855#I2C60_RS01180
RRLytTRCurrent focus
13 709-14 422 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000484655#K316_RS0108525Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0963025
Simplified PFAM architecture for RROC_0963025
PFAM domain coverage: 208 / 237 aa (87.8%)
1 aa237 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-119] | LytTR[138-229]
- Domain count: 2
- Matched identifier: RROC_0963025
- Positioned domains: Response_reg 4-119 ; Response_reg 4-119 ; LytTR 138-229 ; LytTR 138-229
Cluster members and taxonomy
Representative gene: GCF_000484655#K316_RS0108525
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_015550855
AssemblyASM1555085v1 · Scaffoldhaploid
Genome composition3 919 843 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 124 · HK 62 · RR 59CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key