1 HAMP#1
226-299 aa · 74 aa · 14.0% of protein
Raw token
HAMP:226:0.00000000199:299:74:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2C60_RS01320
Histidine kinase, Classic
Blautia wexlerae · GCF_015550855
ClassHKTypeClassicLength529 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015550855#I2C60_RS01320Stable P2CS identifier used across views.
GenomeGCF_015550855Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length529 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage259 / 529 aa (49.0%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa529 aa
Domain-by-domain annotation3 items
2 His_kinase#2
316-394 aa · 79 aa · 14.9% of protein
Raw token
His_kinase:316:4.53e-26:394:80:803 HATPase_c#3
414-519 aa · 106 aa · 20.0% of protein
Raw token
HATPase_c:414:0.000000000472:519:108:109- Raw architecture: HAMP:226:0.00000000199:299:74:69#His_kinase:316:4.53e-26:394:80:80#HATPase_c:414:0.000000000472:519:108:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015550855::NZ_JADNBQ010000008.1::G00072
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12008-15092Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015550855::NZ_JADNBQ010000008.1::G00072Context members
I2C60_RS01315I2C60_RS01320
Partner locus tags
I2C60_RS01315I2C60_RS01320
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_165858255.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2C60_RS01320Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNBQ010000008.1Sequence record reported by the local genomic context database.
Genomic interval13 503-15 092 nt1 590 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span12 008-15 092 ntGCF_015550855::NZ_JADNBQ010000008.1::G00072
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015550855::NZ_JADNBQ010000008.1::G00072Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNBQ010000008.1All displayed genes belong to this local TCS context.
Neighborhood span12 008-15 092 nt3 085 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 008 nt15 092 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2C60_RS01315GCF_015550855#I2C60_RS01315
RRunclassified
12 008-13 525 nt · Reverse (-)
I2C60_RS01320GCF_015550855#I2C60_RS01320
HKClassicCurrent focus
13 503-15 092 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015550855#I2C60_RS01320The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1361145
Simplified PFAM architecture for HKOC_1361145
PFAM domain coverage: 230 / 529 aa (43.5%)
1 aa529 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[251-298] | His_kinase[316-393] | HATPase_c[414-517]
- Domain count: 3
- Matched identifier: HKOC_1361145
- Positioned domains: HAMP 251-298 ; His_kinase 316-393 ; HATPase_c 414-517
Cluster members and taxonomy
Representative gene: GCF_015550855#I2C60_RS01320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_015550855
AssemblyASM1555085v1 · Scaffoldhaploid
Genome composition3 919 843 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 124 · HK 62 · RR 59CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key