1 Response_reg#1
4-117 aa · 114 aa · 22.6% of protein
Raw token
Response_reg:4:9.74e-29:117:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2C60_RS01315
Response regulator, unclassified
Blautia wexlerae · GCF_015550855
ClassRRTypeunclassifiedLength505 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015550855#I2C60_RS01315Stable P2CS identifier used across views.
GenomeGCF_015550855Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length505 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage193 / 505 aa (38.2%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa505 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
410-450 aa · 41 aa · 8.1% of protein
Raw token
HTH_AraC:410:0.0000000851:450:41:423 HTH_AraC#3
463-500 aa · 38 aa · 7.5% of protein
Raw token
HTH_AraC:463:0.000000102:500:38:42- Raw architecture: Response_reg:4:9.74e-29:117:118:111#HTH_AraC:410:0.0000000851:450:41:42#HTH_AraC:463:0.000000102:500:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015550855::NZ_JADNBQ010000008.1::G00072
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12008-15092Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015550855::NZ_JADNBQ010000008.1::G00072Context members
I2C60_RS01315I2C60_RS01320
Partner locus tags
I2C60_RS01315I2C60_RS01320
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118569577.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2C60_RS01315Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNBQ010000008.1Sequence record reported by the local genomic context database.
Genomic interval12 008-13 525 nt1 518 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span12 008-15 092 ntGCF_015550855::NZ_JADNBQ010000008.1::G00072
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015550855::NZ_JADNBQ010000008.1::G00072Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNBQ010000008.1All displayed genes belong to this local TCS context.
Neighborhood span12 008-15 092 nt3 085 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 008 nt15 092 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2C60_RS01315GCF_015550855#I2C60_RS01315
RRunclassifiedCurrent focus
12 008-13 525 nt · Reverse (-)
I2C60_RS01320GCF_015550855#I2C60_RS01320
HKClassic
13 503-15 092 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015550855#I2C60_RS01315The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0152868
Simplified PFAM architecture for RROC_0152868
PFAM domain coverage: 192 / 505 aa (38.0%)
1 aa505 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[423-501]
- Domain count: 2
- Matched identifier: RROC_0152868
- Positioned domains: Response_reg 4-116 ; HTH_18 423-501
Cluster members and taxonomy
Representative gene: GCF_015550855#I2C60_RS01315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_015550855
AssemblyASM1555085v1 · Scaffoldhaploid
Genome composition3 919 843 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 124 · HK 62 · RR 59CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key