1 Response_reg#1
12-120 aa · 109 aa · 46.8% of protein
Raw token
Response_reg:12:1.11e-31:120:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2C60_RS03920
Response regulator OmpR family
Blautia wexlerae · GCF_015550855
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015550855#I2C60_RS03920Stable P2CS identifier used across views.
GenomeGCF_015550855Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 233 aa (79.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 33.0% of protein
Raw token
Trans_reg_C:153:1.92e-29:229:77:77- Raw architecture: Response_reg:12:1.11e-31:120:110:111#Trans_reg_C:153:1.92e-29:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015550855::NZ_JADNBQ010000032.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span15099-17169Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015550855::NZ_JADNBQ010000032.1::G00040Context members
I2C60_RS03915I2C60_RS03920
Partner locus tags
I2C60_RS03915I2C60_RS03920
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025581231.1Primary protein accession used for annex mappings.
UniProt accessionA0A174SF98Primary UniProt accession resolved in the annex database.
UniProt IDA0A174SF98_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2C60_RS03920Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNBQ010000032.1Sequence record reported by the local genomic context database.
Genomic interval16 468-17 169 nt702 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span15 099-17 169 ntGCF_015550855::NZ_JADNBQ010000032.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015550855::NZ_JADNBQ010000032.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNBQ010000032.1All displayed genes belong to this local TCS context.
Neighborhood span15 099-17 169 nt2 071 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 099 nt17 169 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2C60_RS03915GCF_015550855#I2C60_RS03915
HKClassic
15 099-16 463 nt · Reverse (-)
I2C60_RS03920GCF_015550855#I2C60_RS03920
RROmpRCurrent focus
16 468-17 169 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000484655#K316_RS0121690Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1082871
Simplified PFAM architecture for RROC_1082871
PFAM domain coverage: 185 / 233 aa (79.4%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[12-120] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_1082871
- Positioned domains: Response_reg 12-120 ; Response_reg 12-120 ; Trans_reg_C 154-229 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_000484655#K316_RS0121690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_015550855
AssemblyASM1555085v1 · Scaffoldhaploid
Genome composition3 919 843 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 124 · HK 62 · RR 59CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key