1 dCache_1#1
42-278 aa · 237 aa · 38.9% of protein
Raw token
dCache_1:42:0.0000000609:278:243:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2C60_RS03500
Histidine kinase, Classic
Blautia wexlerae · GCF_015550855
ClassHKTypeClassicLength610 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015550855#I2C60_RS03500Stable P2CS identifier used across views.
GenomeGCF_015550855Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length610 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage489 / 610 aa (80.2%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa610 aa
Domain-by-domain annotation4 items
2 HAMP#2
296-364 aa · 69 aa · 11.3% of protein
Raw token
HAMP:296:0.0000000000000234:364:69:693 His_kinase#3
380-458 aa · 79 aa · 13.0% of protein
Raw token
His_kinase:380:4.69e-34:458:79:804 HATPase_c#4
481-584 aa · 104 aa · 17.0% of protein
Raw token
HATPase_c:481:0.0000000000193:584:104:109- Raw architecture: dCache_1:42:0.0000000609:278:243:195#HAMP:296:0.0000000000000234:364:69:69#His_kinase:380:4.69e-34:458:79:80#HATPase_c:481:0.0000000000193:584:104:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015550855::NZ_JADNBQ010000028.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12973-16418Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015550855::NZ_JADNBQ010000028.1::G00035Context members
I2C60_RS03500I2C60_RS03505
Partner locus tags
I2C60_RS03500I2C60_RS03505
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195303123.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2C60_RS03500Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNBQ010000028.1Sequence record reported by the local genomic context database.
Genomic interval12 973-14 805 nt1 833 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span12 973-16 418 ntGCF_015550855::NZ_JADNBQ010000028.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015550855::NZ_JADNBQ010000028.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNBQ010000028.1All displayed genes belong to this local TCS context.
Neighborhood span12 973-16 418 nt3 446 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 973 nt16 418 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2C60_RS03500GCF_015550855#I2C60_RS03500
HKClassicCurrent focus
12 973-14 805 nt · Forward (+)
I2C60_RS03505GCF_015550855#I2C60_RS03505
RRunclassified
14 805-16 418 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015550855#I2C60_RS03500The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1006338
Simplified PFAM architecture for HKOC_1006338
PFAM domain coverage: 239 / 610 aa (39.2%)
1 aa610 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[313-364] | His_kinase[380-458] | HATPase_c[477-584]
- Domain count: 3
- Matched identifier: HKOC_1006338
- Positioned domains: HAMP 313-364 ; His_kinase 380-458 ; HATPase_c 477-584
Cluster members and taxonomy
Representative gene: GCF_015550855#I2C60_RS03500
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_015550855
AssemblyASM1555085v1 · Scaffoldhaploid
Genome composition3 919 843 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 124 · HK 62 · RR 59CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key