1 dCache_1#1
146-265 aa · 120 aa · 19.8% of protein
Raw token
dCache_1:146:0.00000157:265:121:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2C60_RS02435
Histidine kinase, Classic
Blautia wexlerae · GCF_015550855
ClassHKTypeClassicLength606 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015550855#I2C60_RS02435Stable P2CS identifier used across views.
GenomeGCF_015550855Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1His_kinaseHATPase_c
Protein length606 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage306 / 606 aa (50.5%)Merged over positioned domains only.
Domain description1 dCache_1,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa606 aa
Domain-by-domain annotation3 items
2 His_kinase#2
393-478 aa · 86 aa · 14.2% of protein
Raw token
His_kinase:393:4.88e-22:478:86:803 HATPase_c#3
501-600 aa · 100 aa · 16.5% of protein
Raw token
HATPase_c:501:0.00000000947:600:104:109- Raw architecture: dCache_1:146:0.00000157:265:121:195#His_kinase:393:4.88e-22:478:86:80#HATPase_c:501:0.00000000947:600:104:109
- Domain description: 1 dCache_1,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015550855::NZ_JADNBQ010000017.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span21056-24126Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015550855::NZ_JADNBQ010000017.1::G00020Context members
I2C60_RS02435I2C60_RS02440
Partner locus tags
I2C60_RS02435I2C60_RS02440
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118613430.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2C60_RS02435Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNBQ010000017.1Sequence record reported by the local genomic context database.
Genomic interval21 056-22 876 nt1 821 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span21 056-24 126 ntGCF_015550855::NZ_JADNBQ010000017.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015550855::NZ_JADNBQ010000017.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNBQ010000017.1All displayed genes belong to this local TCS context.
Neighborhood span21 056-24 126 nt3 071 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 056 nt24 126 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2C60_RS02435GCF_015550855#I2C60_RS02435
HKClassicCurrent focus
21 056-22 876 nt · Forward (+)
I2C60_RS02440GCF_015550855#I2C60_RS02440
RRunclassified
22 931-24 126 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015550855#I2C60_RS02435The current gene is the representative for this cluster.
PFAM architectureHis_kinase1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1025445
Simplified PFAM architecture for HKOC_1025445
PFAM domain coverage: 84 / 606 aa (13.9%)
1 aa606 aa
His_kinase
- Simplified architecture: His_kinase
- Raw architecture: His_kinase[394-477]
- Domain count: 1
- Matched identifier: HKOC_1025445
- Positioned domains: His_kinase 394-477
Cluster members and taxonomy
Representative gene: GCF_015550855#I2C60_RS02435
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_015550855
AssemblyASM1555085v1 · Scaffoldhaploid
Genome composition3 919 843 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 124 · HK 62 · RR 59CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key